Motif J5_71788.3 Version J5_71788.3 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-3 | 3-4 | 3-15 | 4-15 | 5-16 | 7-8 | 9-10 | 11-12 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_5TBW_006 | 5TBW | 0.7186 | 3 | 1 | LSU rRNA | U | 2416 | U | 2417 | A | 2419 | * | U | 2611 | U | 2612 | U | 2613 | G | 2614 | * | C | 2627 | A | 2628 | * | U | 2650 | G | 2651 | * | C | 2798 | A | 2801 | A | 2802 | A | 2803 | A | 2804 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW | |
| 2 | J5_4V9F_008 | 4V9F | 0.6791 | 3 | 0 | LSU rRNA | U | 2115 | U | 2116 | A | 2118 | * | U | 2276 | U | 2277 | U | 2278 | G | 2279 | * | C | 2292 | G | 2293 | * | C | 2315 | G | 2316 | * | C | 2464 | A | 2467 | A | 2468 | A | 2469 | A | 2470 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW | |
| 3 | J5_7RQB_007 | 7RQB | 0.0786 | 5 | 1A | LSU rRNA | U | 2074 | U | 2075 | A | 2077 | * | U | 2243 | U | 2244 | U | 2245 | G | 2246 | * | C | 2258 | G | 2259 | * | C | 2281 | G | 2282 | * | C | 2427 | A | 2432 | A | 2433 | A | 2434 | A | 2435 | cWW | cWH | cWW | ncsS | cWH | cWW | cWW | cWW | |
| 4 | J5_7A0S_007 | 7A0S | 0.0000 | 5 | X | LSU rRNA | U | 2057 | U | 2058 | A | 2060 | * | U | 2222 | U | 2223 | U | 2224 | G | 2225 | * | C | 2237 | G | 2238 | * | C | 2260 | G | 2261 | * | C | 2406 | A | 2411 | A | 2412 | A | 2413 | A | 2414 | cWW | cWH | cWW | cWH | cWW | cWW | cWW | ||
| 5 | J5_4WF9_007 | 4WF9 | 0.0806 | 5 | X | LSU rRNA | U | 2101 | U | 2102 | A | 2104 | * | U | 2270 | U | 2271 | U | 2272 | G | 2273 | * | C | 2285 | G | 2286 | * | C | 2308 | G | 2309 | * | C | 2454 | A | 2459 | A | 2460 | A | 2461 | A | 2462 | cWW | cWH | cWW | cWH | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUA*UUUG*CG*CG*CGGAUAAAA | 3 |
| UUGA*UUUG*CA*UG*CAGAAAA | 1 |
| UUUA*UUUG*CG*CG*CAGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*UU***GGAUAAA | 3 |
| UG*UU***AGAAA | 1 |
| UU*UU***AGAAA | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
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- (5)
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.38 | Max 0.73
Coloring options: