Motif J5_87030.1 Version J5_87030.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-3 | 3-4 | 3-15 | 4-15 | 5-16 | 7-8 | 9-10 | 11-12 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_8P9A_015 | 8P9A | 0.7206 | 3 | AR | LSU rRNA | U | 2416 | U | 2417 | A | 2419 | * | U | 2611 | U | 2612 | U | 2613 | G | 2614 | * | C | 2627 | A | 2628 | * | U | 2650 | G | 2651 | * | C | 2798 | A | 2801 | A | 2802 | A | 2803 | A | 2804 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW | |
| 2 | J5_4V9F_008 | 4V9F | 0.6791 | 3 | 0 | LSU rRNA | U | 2115 | U | 2116 | A | 2118 | * | U | 2276 | U | 2277 | U | 2278 | G | 2279 | * | C | 2292 | G | 2293 | * | C | 2315 | G | 2316 | * | C | 2464 | A | 2467 | A | 2468 | A | 2469 | A | 2470 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | cWW | |
| 3 | J5_9DFE_007 | 9DFE | 0.1069 | 5 | 1A | LSU rRNA | U | 2074 | U | 2075 | A | 2077 | * | U | 2243 | U | 2244 | U | 2245 | G | 2246 | * | C | 2258 | G | 2259 | * | C | 2281 | G | 2282 | * | C | 2427 | A | 2432 | A | 2433 | A | 2434 | A | 2435 | cWW | cWH | cWW | ncsS | ntsS | cWH | cWW | cWW | cWW |
| 4 | J5_7A0S_007 | 7A0S | 0.0000 | 5 | X | LSU rRNA | U | 2057 | U | 2058 | A | 2060 | * | U | 2222 | U | 2223 | U | 2224 | G | 2225 | * | C | 2237 | G | 2238 | * | C | 2260 | G | 2261 | * | C | 2406 | A | 2411 | A | 2412 | A | 2413 | A | 2414 | cWW | cWH | cWW | cWH | cWW | cWW | cWW | ||
| 5 | J5_4WF9_007 | 4WF9 | 0.0806 | 5 | X | LSU rRNA | U | 2101 | U | 2102 | A | 2104 | * | U | 2270 | U | 2271 | U | 2272 | G | 2273 | * | C | 2285 | G | 2286 | * | C | 2308 | G | 2309 | * | C | 2454 | A | 2459 | A | 2460 | A | 2461 | A | 2462 | cWW | cWH | cWW | cWH | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUA*UUUG*CG*CG*CGGAUAAAA | 3 |
| UUGA*UUUG*CA*UG*CAGAAAA | 1 |
| UUUA*UUUG*CG*CG*CAGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*UU***GGAUAAA | 3 |
| UG*UU***AGAAA | 1 |
| UU*UU***AGAAA | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-F-F-cWW-F-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.38 | Max 0.73
Coloring options: