1QC8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1QC8_001 | 1/A/10:17 | No text annotation | geometric HL_4V9F_019 HL_42293.1 | |
| HL_1QC8_002 | 2/A/10:17 | No text annotation | geometric HL_4V9F_019 HL_42293.1 | |
| HL_1QC8_003 | 3/A/10:17 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_1QC8_004 | 4/A/10:17 | No text annotation | ||
| HL_1QC8_005 | 5/A/10:17 | No text annotation | ||
| HL_1QC8_006 | 6/A/10:17 | No text annotation | ||
| HL_1QC8_007 | 7/A/10:17 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_1QC8_008 | 8/A/10:17 | No text annotation | geometric HL_4WF9_011 HL_75660.9 | |
| HL_1QC8_009 | 9/A/10:17 | No text annotation | geometric HL_4V9F_019 HL_42293.1 | |
| HL_1QC8_010 | 10/A/10:17 | No text annotation | geometric HL_361D_002 NA | |
| HL_1QC8_011 | 11/A/10:17 | No text annotation | ||
| HL_1QC8_012 | 12/A/10:17 | No text annotation | ||
| HL_1QC8_013 | 13/A/10:17 | No text annotation | ||
| HL_1QC8_014 | 14/A/10:17 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_1QC8_015 | 15/A/10:17 | No text annotation | ||
| HL_1QC8_016 | 16/A/10:17 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_1QC8_017 | 17/A/10:17 | No text annotation | ||
| HL_1QC8_018 | 18/A/10:17 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_1QC8_019 | 19/A/10:17 | No text annotation | geometric HL_361D_002 NA | |
| HL_1QC8_020 | 20/A/10:17 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_1QC8_021 | 21/A/10:17 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_1QC8_022 | 22/A/10:17 | No text annotation | ||
| HL_1QC8_023 | 23/A/10:17 | No text annotation | ||
| HL_1QC8_024 | 24/A/10:17 | No text annotation | ||
| HL_1QC8_025 | 25/A/10:17 | No text annotation | ||
| HL_1QC8_026 | 26/A/10:17 | No text annotation | ||
| HL_1QC8_027 | 27/A/10:17 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_1QC8_028 | 28/A/10:17 | No text annotation | geometric HL_7A0S_007 HL_91813.1 | |
| HL_1QC8_029 | 29/A/10:17 | No text annotation |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1QC8_001 | 1/A/3:5, 1/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_002 | 2/A/3:5, 2/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_003 | 3/A/3:5, 3/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_004 | 4/A/3:5, 4/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_005 | 5/A/3:5, 5/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_006 | 6/A/3:5, 6/A/22:23 | Single stack bend | geometric IL_4V9F_081 IL_15011.4 | |
| IL_1QC8_007 | 7/A/3:5, 7/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_008 | 8/A/3:5, 8/A/22:23 | Single stack bend | geometric IL_7A0S_054 IL_15011.4 | |
| IL_1QC8_009 | 9/A/3:5, 9/A/22:23 | Single stack bend | geometric IL_7A0S_054 IL_15011.4 | |
| IL_1QC8_010 | 10/A/3:5, 10/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_011 | 11/A/3:5, 11/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_012 | 12/A/3:5, 12/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_013 | 13/A/3:5, 13/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_014 | 14/A/3:5, 14/A/22:23 | Single stack bend | geometric IL_7A0S_054 IL_15011.4 | |
| IL_1QC8_015 | 15/A/3:5, 15/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_016 | 16/A/3:5, 16/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_018 | 17/A/3:5, 17/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_019 | 18/A/3:5, 18/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_020 | 19/A/3:5, 19/A/22:23 | Single stack bend | geometric IL_5J7L_269 NA | |
| IL_1QC8_021 | 20/A/3:5, 20/A/22:23 | Single stack bend | geometric IL_5J7L_269 NA | |
| IL_1QC8_022 | 21/A/3:5, 21/A/22:23 | Single stack bend | geometric IL_5J7L_269 NA | |
| IL_1QC8_023 | 22/A/3:5, 22/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_024 | 23/A/3:5, 23/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_025 | 24/A/3:5, 24/A/22:23 | No text annotation | ||
| IL_1QC8_026 | 25/A/3:5, 25/A/22:23 | Single stack bend | geometric IL_5J7L_269 NA | |
| IL_1QC8_027 | 26/A/3:5, 26/A/22:23 | No text annotation | ||
| IL_1QC8_028 | 27/A/3:5, 27/A/22:23 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_1QC8_029 | 28/A/3:5, 28/A/22:23 | Single stack bend | geometric IL_7A0S_054 IL_15011.4 | |
| IL_1QC8_030 | 29/A/3:5, 29/A/22:23 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1QC8_017 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
No problematic loops
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