28LN Summary
- Structure title
- XBP1u-stalled RPL4 RNC in complex with NAC
- Authors
- Santos, J., Guennigmann, M., Gora, R.J., Iljina, M., Predin, M., Kotan, I.E., De, P., Choudhary, D., Jang, J., Tippmann, F., Hins, C., Ban, N., Tans, S.J., Shan, S., Kramer, G., Bukau, B.
- Release date
- 2026-06-10
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
- Chains
- 6 RNA chains from Homo sapiens
- 80 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA, tRNA-Met-CAT, mRNA fragment (6-MER), 28S rRNA, 5S rRNA, 5.8S rRNA
- Small ribosomal subunit protein uS2, 40S ribosomal protein S3a, 40S ribosomal protein S2, 40S ribosomal protein S3, Small ribosomal subunit protein eS4, X isoform, 40S ribosomal protein S5, 40S ribosomal protein S6, 40S ribosomal protein S7, 40S ribosomal protein S8, 40S ribosomal protein S9, 40S ribosomal protein S10, Small ribosomal subunit protein uS17, 40S ribosomal protein S12, 40S ribosomal protein S13, 40S ribosomal protein S14, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17, Small ribosomal subunit protein uS13, Small ribosomal subunit protein eS19, 40S ribosomal protein S20, Small ribosomal subunit protein eS21, 40S ribosomal protein S15a, Small ribosomal subunit protein uS12, 40S ribosomal protein S24, Small ribosomal subunit protein eS25, 40S ribosomal protein S26, 40S ribosomal protein S27, 40S ribosomal protein S28, 40S ribosomal protein S29, Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein, Ubiquitin, Receptor of activated protein C kinase 1, 60S ribosomal protein L41, Large ribosomal subunit protein uL4,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form, Large ribosomal subunit protein uL2, Large ribosomal subunit protein uL3, 60S ribosomal protein L4, 60S ribosomal protein L5, Large ribosomal subunit protein eL6, Large ribosomal subunit protein uL30, 60S ribosomal protein L7a, 60S ribosomal protein L9, 60S ribosomal protein L10, 60S ribosomal protein L11, 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15, 60S ribosomal protein L13a, 60S ribosomal protein L17, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L18a, 60S ribosomal protein L21, 60S ribosomal protein L22, 60S ribosomal protein L23, 60S ribosomal protein L24, 60S ribosomal protein L23a, 60S ribosomal protein L26, 60S ribosomal protein L27, Large ribosomal subunit protein uL15, Large ribosomal subunit protein eL29, 60S ribosomal protein L30, 60S ribosomal protein L31, 60S ribosomal protein L32, 60S ribosomal protein L35a, 60S ribosomal protein L34, 60S ribosomal protein L35, 60S ribosomal protein L36, Large ribosomal subunit protein eL37, 60S ribosomal protein L38, 60S ribosomal protein L39, Ubiquitin-60S ribosomal protein L40, Large ribosomal subunit protein eL42, 60S ribosomal protein L37a, Large ribosomal subunit protein eL28, 60S acidic ribosomal protein P0, Large ribosomal subunit protein uL11, Nascent polypeptide-associated complex subunit alpha, Transcription factor BTF3
Pairwise Interactions
Interactions annotated by FR3D:- 2,033 base-pairs
- 5,824 base-stacking
- 477 base-phosphate
- 541 base-ribose
- 237 oxygen stacking
- 362 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 28LN contains:- 114 hairpin loops from 0 motif groups
- 266 internal loops from 0 motif groups
- 69 junction loops from 0 motif groups
3D Redundancy
28LN has chains which belong to the following equivalence classes in the current representative set:- NR_all_65061.59 (1)
- NR_all_52752.55 (1)
- NR_all_46995.68 (1)
- NR_all_96358.1 (1) rep
- NR_4.0_65061.59 (1)
- NR_4.0_52752.55 (1)
- NR_4.0_46995.68 (1)
- NR_4.0_96358.1 (1) rep
- NR_3.5_65061.59 (1)
- NR_3.5_52752.55 (1)
- NR_3.5_46995.68 (1)
- NR_3.5_96358.1 (1) rep
- NR_3.0_65061.59 (1)
- NR_3.0_52752.55 (1)
- NR_3.0_46995.68 (1)
- NR_3.0_96358.1 (1) rep
- NR_20.0_65061.59 (1)
- NR_20.0_52752.55 (1)
- NR_20.0_46995.68 (1)
- NR_20.0_96358.1 (1) rep
Similar structures
8GLP 8QOI 9SPF 8YOO 9O3W 9O3V 9S3D 9C3H 9S3B 8G5Y 9S3C 9QLO 9I2D 6ZLW 9SPI 8T4S 8YOP 9QLQ 6ZXG 8G60 9O3Y 9RUC 8G5Z 9PBE 6ZMI 9FQZ 9BKD 8K2C 9P8B 6ZP4 9RPV 8PPL 6ZXH 9QLP 7XNY 7XNX 9P7E 6ZM7 8XSX 9P7D 9P7O 8XXL 9RPV 6ZVH 9P73 7MQA 8PJ5 7K5I 28ZX 9ED0 6ZOJ 9RUA 6ZME 9RU9 9P7Y 9RU8 6ZMO 22TU 8PJ6 9P72 9P7C 6ZV6 6Y2L 7WTX 9KRP 7WTZ 9P7K 28ZV 7QVP 8G61 9P7A 9P7X 9KN5 9P76 9P6Z 8XXM 9P7N 6ZMT 9I14 6ZON 6Z6M 7R4X 7WTU 9RU7 9KN6 9P9I 6ZN5 9KN0 7WTT 28ZY 6ZXE 9KZU 6ZXD 8PJ4 8Y0X 9KKF 8XP2 8OZ0 9KMW 8JDJ 6Y0G 8G6J 9P78 9P7L 9P9H 9KMZ 9KMY 7A09 7WTW 6ZOK 7QVP 6ZUO 9G8O 6OM0 6OLE 9P7W 6YBW 7WU0 8JDL 8XXN 8XSY 9PA7 8XP3 9KMT 8XSZ 9KMV 8JDK 8PJ2 9KMU 6ZXF 8Y0W 8JDM 9P8H 28ZU 6ZOL 8PJ1 9B0P 6XA1 6Y57 8UKB 7TQL 9B0Q 7QP7 9KMX 9P79 8IFE 9P8C 9BLN 7WTS 9Y4G 9B0Q 6ZVJ 9SYR 8PJ3 9B0S 4UG0 9P7G 8IFD 6G5I 9P7F 9G8M 7WTV 9PKG 9Y49 9P7I 9I2E 9P7H 6G5H 9M0P 6G18 6IP5 5A2Q 9B0S 6OLI 7MQ8 6IP8 9P7J 9P8I 6G51 9KZX 5LKS 6G4S 6OLG 7MQ9 7QP6 5OA3 6OLF 8RG0 6OLZ 6G53 6G4W 6OM7 6IP6 5VYC 5VYC 5VYC 5VYC 5VYC 6FEC 5VYC 4V6X 5A8L 5T2C 6Z6L 6Z6N 6ZMW 5AJ0 9RG7 8PPK 6QZP 8ZDB 8ZDD 8ZDCStructures from NR_all_46995.68