2GDI Summary
- Structure title
- Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate
- Authors
- Serganov, A.
- Release date
- 2006-07-04
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 2.1 Å
- Chains
- 2 RNA chains from unknown source
- 0 other chains
- Nucleic acid compounds
- Other compounds
- TPP riboswitch, TPP riboswitch
Pairwise Interactions
Interactions annotated by FR3D:- 73 base-pairs
- 169 base-stacking
- 2 base-phosphate
- 5 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 2GDI contains:- 4 hairpin loops from 0 motif groups
- 10 internal loops from 0 motif groups
- 2 junction loops from 0 motif groups
3D Redundancy
2GDI has chains which belong to the following equivalence classes in the current representative set:- NR_all_42241.5 (2)
- NR_4.0_42241.5 (2)
- NR_3.5_42241.5 (2)
- NR_3.0_42241.5 (2)
- NR_20.0_42241.5 (2)
- NR_2.5_42241.5 (2)