4LCK Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4LCK_002 | 1/B/30:38 | No text annotation HL_83632.1 | ||
| HL_4LCK_003 | 1/B/52:60 | T-loop with 2 stacked bulged bases HL_28252.9 | ||
| HL_4LCK_004 | 1/B/71:76 | GNRA HL_37824.8 | ||
| HL_4LCK_005 | 1/C/52:64 | No text annotation | geometric HL_4LCK_010 HL_86109.1 | |
| HL_4LCK_006 | 1/E/13:21 | No text annotation | homologous HL_4LCK_001 NA | |
| HL_4LCK_007 | 1/E/30:38 | No text annotation | homologous HL_4LCK_002 HL_83632.1 | |
| HL_4LCK_008 | 1/E/52:60 | T-loop with 2 stacked bulged bases | homologous HL_4LCK_003 HL_28252.9 | |
| HL_4LCK_009 | 1/E/71:76 | GNRA | homologous HL_4LCK_004 HL_37824.8 | |
| HL_4LCK_010 | 1/F/52:64 | No text annotation HL_86109.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4LCK_001 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4LCK_001 | 1/C/6:12, 1/C/94:97 | Kink-turn from T-box riboswitch | geometric IL_4LCK_006 IL_51265.3 | |
| IL_4LCK_013 | 1/C/15:23, 1/C/83:91 | 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge | geometric IL_4LCK_007 IL_70670.1 | |
| IL_4LCK_003 | 1/C/28:31, 1/C/77:78 | Other IL | geometric IL_4LCK_008 IL_79895.1 | |
| IL_4LCK_011 | 1/C/37:47, 1/C/69:71 | No text annotation | geometric IL_4LCK_009 IL_80209.1 | |
| IL_4LCK_006 | 1/F/6:12, 1/F/94:97 | Kink-turn from T-box riboswitch IL_51265.3 | ||
| IL_4LCK_007 | 1/F/15:23, 1/F/83:91 | 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge IL_70670.1 | ||
| IL_4LCK_008 | 1/F/28:31, 1/F/77:78 | Other IL IL_79895.1 | ||
| IL_4LCK_009 | 1/F/37:47, 1/F/69:71 | No text annotation IL_80209.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4LCK_010 | No text annotation | ||
| IL_4LCK_002 | Isolated non-canonical cWW pair | ||
| IL_4LCK_004 | No text annotation | ||
| IL_4LCK_005 | No text annotation | ||
| IL_4LCK_012 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_4LCK_001 | 1/B/7:10, 1/B/24:26, 1/B/42:48, 1/B/64:65 | No text annotation | ||
| J4_4LCK_002 | 1/E/7:10, 1/E/24:26, 1/E/42:48, 1/E/64:65 | No text annotation |
Problematic loops
No problematic loops
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