4UJC Summary
- Structure title
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Authors
- Release date
- 2014-07-30
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
- Chains
- 6 RNA chains from Oryctolagus cuniculus, Hepacivirus C
- 77 other chains
- Nucleic acid compounds
- Other compounds
- 28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA, 5S RIBOSOMAL RNA, TRNA, HCV-IRES, 18S RIBOSOMAL RNA
- EIF5B, 60S RIBOSOMAL PROTEIN L8, 60S RIBOSOMAL PROTEIN L3, 60S RIBOSOMAL PROTEIN L4, 60S RIBOSOMAL PROTEIN L5, 60S RIBOSOMAL PROTEIN L6, 60S RIBOSOMAL PROTEIN L7, 60S RIBOSOMAL PROTEIN L7A, 60S RIBOSOMAL PROTEIN L9, 60S RIBOSOMAL PROTEIN L10, 60S RIBOSOMAL PROTEIN L11, 60S RIBOSOMAL PROTEIN L13, 60S RIBOSOMAL PROTEIN L14, 60S RIBOSOMAL PROTEIN L15, 60S RIBOSOMAL PROTEIN L13A, 60S RIBOSOMAL PROTEIN L17, 60S RIBOSOMAL PROTEIN L18, 60S RIBOSOMAL PROTEIN L19, 60S RIBOSOMAL PROTEIN L18A, 60S RIBOSOMAL PROTEIN L21, 60S RIBOSOMAL PROTEIN L22, 60S RIBOSOMAL PROTEIN L23, 60S RIBOSOMAL PROTEIN L24, 60S RIBOSOMAL PROTEIN L23A, 60S RIBOSOMAL PROTEIN L26, 60S RIBOSOMAL PROTEIN L27, 60S RIBOSOMAL PROTEIN L27A, 60S RIBOSOMAL PROTEIN L29, 60S RIBOSOMAL PROTEIN L30, 60S RIBOSOMAL PROTEIN L31, 60S RIBOSOMAL PROTEIN L32, 60S RIBOSOMAL PROTEIN L35A, 60S RIBOSOMAL PROTEIN L34, 60S RIBOSOMAL PROTEIN UL29, 60S RIBOSOMAL PROTEIN L36, 60S RIBOSOMAL PROTEIN L37, 60S RIBOSOMAL PROTEIN L38, 60S RIBOSOMAL PROTEIN L39, UBIQUITIN-60S RIBOSOMAL PROTEIN L40, 60S RIBOSOMAL PROTEIN L41, 60S RIBOSOMAL PROTEIN L36A, 60S RIBOSOMAL PROTEIN L37A, 60S RIBOSOMAL PROTEIN L28, 60S RIBOSOMAL PROTEIN L10A, 40S RIBOSOMAL PROTEIN US2, 40S RIBOSOMAL PROTEIN ES1, 40S RIBOSOMAL PROTEIN US5, 40S RIBOSOMAL PROTEIN US3, 40S RIBOSOMAL PROTEIN ES4, 40S RIBOSOMAL PROTEIN US7, 40S RIBOSOMAL PROTEIN ES6, 40S RIBOSOMAL PROTEIN ES7, 40S RIBOSOMAL PROTEIN ES8, 40S RIBOSOMAL PROTEIN US4, 40S RIBOSOMAL PROTEIN ES10, 40S RIBOSOMAL PROTEIN US17, 40S RIBOSOMAL PROTEIN ES12, 40S RIBOSOMAL PROTEIN US15, 40S RIBOSOMAL PROTEIN US11, 40S RIBOSOMAL PROTEIN US19, 40S RIBOSOMAL PROTEIN US9, 40S RIBOSOMAL PROTEIN ES17, 40S RIBOSOMAL PROTEIN US13, 40S RIBOSOMAL PROTEIN ES19, 40S RIBOSOMAL PROTEIN US10, 40S RIBOSOMAL PROTEIN ES21, 40S RIBOSOMAL PROTEIN US8, 40S RIBOSOMAL PROTEIN US12, 40S RIBOSOMAL PROTEIN ES24, 40S RIBOSOMAL PROTEIN ES25, 40S RIBOSOMAL PROTEIN ES26, 40S RIBOSOMAL PROTEIN ES27, 40S RIBOSOMAL PROTEIN ES28, 40S RIBOSOMAL PROTEIN US14, 40S RIBOSOMAL PROTEIN ES30, 40S RIBOSOMAL PROTEIN ES31, 40S RIBOSOMAL PROTEIN RACK1
Pairwise Interactions
Interactions annotated by FR3D:- 1,294 base-pairs
- 5,024 base-stacking
- 478 base-phosphate
- 608 base-ribose
- 245 oxygen stacking
- 145 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 4UJC contains:- 146 hairpin loops from 0 motif groups
- 341 internal loops from 0 motif groups
- 97 junction loops from 0 motif groups
3D Redundancy
4UJC has chains which belong to the following equivalence classes in the current representative set:- NR_all_22323.5 (1)
- NR_all_06650.50 (1)
- NR_all_10255.50 (1)
- NR_all_21280.51 (1)
- NR_all_51281.3 (1) rep
- NR_20.0_22323.5 (1)
- NR_20.0_06650.50 (1)
- NR_20.0_10255.50 (1)
- NR_20.0_21280.51 (1)
- NR_20.0_51281.3 (1) rep
Similar structures
8SCB 7O7Z 8RJB 8RJD 8RJC 9RHU 8B6C 8B5L 9YQ0 9YQ1 9YPZ 8VVQ 9BDL 9YPW 9YPY 9YPG 8BPO 9YPO 9YPS 9QQA 9YPV 8P2K 7UCK 9YPT 7NWI 7TOR 8VVP 9BDN 7ZJX 9F1B 9MR4 7TM3 6P5I 9NDP 8BHF 7OBR 7O81 6P5K 7UCJ 6MTD 7TOQ 6MTE 9Q7Q 6P5N 6MTC 6R5Q 9F1D 7MDZ 8VVT 5LZV 5LZS 6MTB 9QQB 5LZZ 6P5J 7A01 6R6P 8VVR 8VVS 7NWG 7QWQ 8VFT 6ZVK 6D90 7NFX 7QWR 5LZW 7TUT 5LZT 6HCF 9F1C 7NWH 9BDP 8VVV 6D9J 6GZ5 6GZ4 5LZU 6GZ3 6FRK 3JAH 6R6G 5LZY 3JAG 6HCJ 6R7Q 3JAI 8VVU 5LZX 3J92 6FTI 6FTJ 6HCQ 6HCM 7QWS 6T59 4UJE 6FTG 4D67 4D5Y 4UJD 3JAJ 3JAN 7O7Y 7ZJW 7O80 6SGC 8BTK 7OYD 9Q1S 9Q2P 9Q2M 9Q1Q 9Q2T 9Q2OStructures from NR_all_06650.50