4V6I Summary
- Structure title
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Authors
- Release date
- 2014-07-09
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
- Chains
- 6 RNA chains from Saccharomyces cerevisiae
- 80 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA, P-SITE TRNA ASP, MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3'), 25S rRNA, 5.8S rRNA, 5S rRNA
- 40S ribosomal protein rpS0 (S2p), 40S ribosomal protein rpS3 (S3p), 40S ribosomal protein rpS9 (S4p), 40S ribosomal protein rpS4 (S4e), 40S ribosomal protein rpS2 (S5p), 40S ribosomal protein rpS5 (S7p), 40S ribosomal protein rpS7 (S7e), 40S ribosomal protein rpS22 (S8p), 40S ribosomal protein rpS16 (S9p), 40S ribosomal protein rpS20 (S10p), 40S ribosomal protein rpS14 (S11p), 40S ribosomal protein rpS23 (S12p), 40S ribosomal protein rpS18 (S13p), 40S ribosomal protein rpS29 (S14p), 40S ribosomal protein rpS13 (S15p), 40S ribosomal protein rpS11 (S17p), 40S ribosomal protein rpS17 (S17e), 40S ribosomal protein rpS15 (S19p), 40S ribosomal protein rpS19 (S19e), 40S ribosomal protein rpS21 (S21e), 40S ribosomal protein S24, 40S ribosomal protein rpS25 (S25e), 40S ribosomal protein rpS26 (S26e), 40S ribosomal protein rpS27 (S27e), 40S ribosomal protein rpS28 (S28e), 40S ribosomal protein rpS30 (S30e), 40S ribosomal protein RACK1 (RACK1), Unknown 40S ribosomal protein XS1, Unknown 40S ribosomal protein XS2, 60S ribosomal protein rpL1 (L1p), 60S ribosomal protein rpL2 (L2p), 60S ribosomal protein rpL3 (L3p), 60S ribosomal protein rpL4 (L4p), 60S ribosomal protein rpL11 (L5p), 60S ribosomal protein rpL9 (L6p), 60S ribosomal protein rpL6 (L6e), 60S ribosomal protein rpL8 (L7ae), 60S ribosomal protein rpL10 (L10e), 60S ribosomal protein rpL12 (L11p), 60S ribosomal protein rpL16 (L13p), 60S ribosomal protein rpL13 (L13e), 60S ribosomal protein rpL23 (L14p), 60S ribosomal protein rpL14 (L14e), 60S ribosomal protein rpL28 (L15p), 60S ribosomal protein rpL15 (L15e), 60S ribosomal protein rpL5 (L18p), 60S ribosomal protein rpL18 (L18e), 60S ribosomal protein rpL20 (L18ae), 60S ribosomal protein rpL19 (L19e), 60S ribosomal protein rpL21 (L21e), 60S ribosomal protein rpL17 (L22p), 60S ribosomal protein rpL22 (L22e), 60S ribosomal protein rpL25 (L23p), 60S ribosomal protein rpL26 (L24p), 60S ribosomal protein rpL24 (L24e), 60S ribosomal protein rpL27 (L27e), 60S ribosomal protein rpL35 (L29p), 60S ribosomal protein rpL29 (L29e), 60S ribosomal protein rpL7 (L30p), 60S ribosomal protein rpL30 (L30e), 60S ribosomal protein rpL31 (L31e), 60S ribosomal protein pL32 (L32e), 60S ribosomal protein rpL34 (L34e), 60S ribosomal protein rpL33 (L35ae), 60S ribosomal protein rpL36 (L36e), 60S ribosomal protein rpL37 (L37e), 60S ribosomal protein rpL43 (L37ae), 60S ribosomal protein rpL38 (L38e), 60S ribosomal protein rpL39 (L39e), 60S ribosomal protein rpL40 (L40e), 60S ribosomal protein rpL41 (L41e), 60S ribosomal protein rpL42 (L44e), 60S acidic ribosomal protein rpP0 (L10P), 60S acidic ribosomal protein rpP11 (P1), 60S acidic ribosomal protein rpP11 (P1), 60S acidic ribosomal protein (P2), 60S acidic ribosomal protein (P2), Unknown protein, Unknown protein, Unknown protein
Pairwise Interactions
Interactions annotated by FR3D:- 1,407 base-pairs
- 4,756 base-stacking
- 74 base-phosphate
- 96 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 4V6I contains:- 123 hairpin loops from 0 motif groups
- 257 internal loops from 0 motif groups
- 64 junction loops from 0 motif groups
3D Redundancy
4V6I has chains which belong to the following equivalence classes in the current representative set:- NR_all_21264.3 (1)
- NR_all_03510.69 (1)
- NR_all_90506.80 (1)
- NR_all_18586.75 (1)
- NR_all_48950.1 (1) rep
- NR_20.0_21264.3 (1)
- NR_20.0_03510.69 (1)
- NR_20.0_90506.80 (1)
- NR_20.0_18586.75 (1)
- NR_20.0_48950.1 (1) rep
Similar structures
8P9A 8P9A 5TBW 4V88 8PNN 4V88 5TBW 8P4V 8PNN 8P4V 8P85 7OSA 8P85 6HHQ 5OBM 5I4L 5MEI 5NDW 5LYB 5I4L 5OBM 5MEI 7OSM 5ON6 6HHQ 5NDW 5LYB 5ON6 5NDV 5NDV 5FCJ 5NDG 5NDG 5FCJ 5TGM 5TGM 4V7R 4V7R 5DAT 5TGA 5DGE 5DGV 5DGF 5DC3 5DAT 5TGA 5DGV 5DGE 5FCI 5DGF 5DC3 5FCI 8T2Y 8CCS 8EVP 8CDR 8CEH 7ZW0 8T2Z 8EWC 8T2X 8BN3 8EUB 7ZUX 8ZHC 8CGN 7MPJ 8EVQ 6LQP 6T4Q 8CIV 8ZHB 8EWB 8T30 6WOO 4U4R 8T3A 8CG8 8ZH3 9F9S 6TB3 6SNT 9F9S 6KE6 4U3U 8T3D 8ZGR 4U4R 8K82 7A1G 6ZVI 7N8B 7MPI 8CF5 8CDL 8CAH 8T3E 4U3U 8ZGY 8T3B 4U3M 8T3F 4U4Q 4U4U 4U52 8Z70 4U3M 8UT0 7RR5 4U6F 8C01 4U4N 4U52 4U4U 4U4Q 6Q8Y 4U6F 4U4Z 7B7D 8CAS 4U4Y 4U3N 6XIR 6SV4 6SV4 8K2D 4U55 6T7T 4U4Z 5M1J 4U4N 8EVT 4U50 6T7I 4U51 8XU8 4U3N 8CKU 7ZPQ 8UTI 4U4Y 4U51 6S47 4U55 6TNU 6LQU 9G33 6FAI 5JUP 6Z6K 6Z6J 4U53 4U50 6RBD 8Y0U 8Z71 6ZQC 4U53 6SV4 8C00 4U56 8BQX 8EVS 6ZQB 4U56 8T3C 6LQQ 7NRC 8BQD 8YLD 8YLR 7SUK 5MC6 6T83 6T83 5JUO 5JUT 8EVR 6RBE 5JUU 6EML 5WLC 8CMJ 6GQB 6Y7C 7D4I 6LQS 5JUS 8C83 6GQV 6ZQD 6XIQ 7AJU 7ZUW 7NRD 4U4O 7WTR 4U4O 4V8Y 6ZQG 6GQ1 7WTN 7AJT 7WTL 7WTO 7ZRS 7WTP 7WTQ 5WYK 5LL6 7WTM 7D5S 6I7O 6LQT 6I7O 6ZCE 6LQV 3J6Y 3J6X 3J77 3J78 6ZU9 6ZQF 4V8Z 7D5T 6ZQE 5TZS 6LQR 5WYJ 7D63Structures from NR_all_03510.69