4V6I Summary
- Structure title
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Authors
- Release date
- 2014-07-09
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
- Chains
- 6 RNA chains from Saccharomyces cerevisiae
- 80 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA, P-SITE TRNA ASP, MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3'), 25S rRNA, 5.8S rRNA, 5S rRNA
- 40S ribosomal protein rpS0 (S2p), 40S ribosomal protein rpS3 (S3p), 40S ribosomal protein rpS9 (S4p), 40S ribosomal protein rpS4 (S4e), 40S ribosomal protein rpS2 (S5p), 40S ribosomal protein rpS5 (S7p), 40S ribosomal protein rpS7 (S7e), 40S ribosomal protein rpS22 (S8p), 40S ribosomal protein rpS16 (S9p), 40S ribosomal protein rpS20 (S10p), 40S ribosomal protein rpS14 (S11p), 40S ribosomal protein rpS23 (S12p), 40S ribosomal protein rpS18 (S13p), 40S ribosomal protein rpS29 (S14p), 40S ribosomal protein rpS13 (S15p), 40S ribosomal protein rpS11 (S17p), 40S ribosomal protein rpS17 (S17e), 40S ribosomal protein rpS15 (S19p), 40S ribosomal protein rpS19 (S19e), 40S ribosomal protein rpS21 (S21e), 40S ribosomal protein S24, 40S ribosomal protein rpS25 (S25e), 40S ribosomal protein rpS26 (S26e), 40S ribosomal protein rpS27 (S27e), 40S ribosomal protein rpS28 (S28e), 40S ribosomal protein rpS30 (S30e), 40S ribosomal protein RACK1 (RACK1), Unknown 40S ribosomal protein XS1, Unknown 40S ribosomal protein XS2, 60S ribosomal protein rpL1 (L1p), 60S ribosomal protein rpL2 (L2p), 60S ribosomal protein rpL3 (L3p), 60S ribosomal protein rpL4 (L4p), 60S ribosomal protein rpL11 (L5p), 60S ribosomal protein rpL9 (L6p), 60S ribosomal protein rpL6 (L6e), 60S ribosomal protein rpL8 (L7ae), 60S ribosomal protein rpL10 (L10e), 60S ribosomal protein rpL12 (L11p), 60S ribosomal protein rpL16 (L13p), 60S ribosomal protein rpL13 (L13e), 60S ribosomal protein rpL23 (L14p), 60S ribosomal protein rpL14 (L14e), 60S ribosomal protein rpL28 (L15p), 60S ribosomal protein rpL15 (L15e), 60S ribosomal protein rpL5 (L18p), 60S ribosomal protein rpL18 (L18e), 60S ribosomal protein rpL20 (L18ae), 60S ribosomal protein rpL19 (L19e), 60S ribosomal protein rpL21 (L21e), 60S ribosomal protein rpL17 (L22p), 60S ribosomal protein rpL22 (L22e), 60S ribosomal protein rpL25 (L23p), 60S ribosomal protein rpL26 (L24p), 60S ribosomal protein rpL24 (L24e), 60S ribosomal protein rpL27 (L27e), 60S ribosomal protein rpL35 (L29p), 60S ribosomal protein rpL29 (L29e), 60S ribosomal protein rpL7 (L30p), 60S ribosomal protein rpL30 (L30e), 60S ribosomal protein rpL31 (L31e), 60S ribosomal protein pL32 (L32e), 60S ribosomal protein rpL34 (L34e), 60S ribosomal protein rpL33 (L35ae), 60S ribosomal protein rpL36 (L36e), 60S ribosomal protein rpL37 (L37e), 60S ribosomal protein rpL43 (L37ae), 60S ribosomal protein rpL38 (L38e), 60S ribosomal protein rpL39 (L39e), 60S ribosomal protein rpL40 (L40e), 60S ribosomal protein rpL41 (L41e), 60S ribosomal protein rpL42 (L44e), 60S acidic ribosomal protein rpP0 (L10P), 60S acidic ribosomal protein rpP11 (P1), 60S acidic ribosomal protein rpP11 (P1), 60S acidic ribosomal protein (P2), 60S acidic ribosomal protein (P2), Unknown protein, Unknown protein, Unknown protein
Pairwise Interactions
Interactions annotated by FR3D:- 1,407 base-pairs
- 4,756 base-stacking
- 202 base-phosphate
- 220 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 4V6I contains:- 123 hairpin loops from 0 motif groups
- 257 internal loops from 0 motif groups
- 64 junction loops from 0 motif groups
3D Redundancy
4V6I has chains which belong to the following equivalence classes in the current representative set:- NR_all_21264.4 (1)
- NR_all_03510.73 (1)
- NR_all_90506.82 (1)
- NR_all_18586.77 (1)
- NR_all_48950.1 (1) rep
- NR_20.0_21264.4 (1)
- NR_20.0_03510.73 (1)
- NR_20.0_90506.82 (1)
- NR_20.0_18586.77 (1)
- NR_20.0_48950.1 (1) rep
Similar structures
7ZW0 8CDR 8CEH 8T2Y 8C01 8EVP 9N74 8CGN 6T4Q 7MPJ 8P9A 8CAH 8T2Z 8P9A 8EWB 6TB3 8T2X 8C00 7N8B 5TBW 9F9S 8EWC 8EVT 4V88 5TBW 8K82 7ZUX 8PNN 8P4V 4V88 7MPI 8CF5 9F9S 8BN3 7ZPQ 8CAS 8P4V 8PNN 6ZVI 8P85 7OSA 6SNT 9N75 9R9O 9G33 9N6W 6HHQ 6Q8Y 8EVQ 5I4L 5OBM 8ZH3 8ZHC 8P85 8K2D 5MEI 5NDW 5LYB 7RR5 5I4L 8T3D 6T7I 5MEI 9N6V 9R9P 5OBM 5ON6 8UTI 6LQP 5LYB 5NDW 6HHQ 5NDV 5ON6 8UT0 5NDV 8CG8 8EVS 8EVR 7OSM 7A1G 6WOO 8T3E 6T7T 6Z6K 6ZQB 8EUB 6SV4 7WTR 6TNU 5M1J 7ZUW 6FAI 7WTN 6ZQC 6S47 8C83 8T3F 6T83 8T3A 8Z70 7WTL 5NDG 7WTO 5FCJ 8T30 7ZRS 7AJU 7WTM 8T3B 7B7D 7WTP 5NDG 5FCJ 7NRC 8XU8 6SV4 6Z6J 6XIR 8Y0U 6RBD 9N6Y 6ZQD 7WTQ 7NRD 6SV4 6XIQ 9N7B 8ZHB 6ZQG 8ZGY 6KE6 7SUK 6GQV 9N6X 6T83 6GQB 6LQS 9N79 9N77 5MC6 7AJT 9N7A 5LL6 5TGM 6EML 8T3C 8ZGR 6GQ1 5TGM 5JUP 8YLR 6Y7C 6LQU 8BQX 5WLC 7D4I 8YLD 9N76 9N78 8BQD 6I7O 5JUT 6I7O 8Z71 5WYK 6ZCE 6LQQ 5JUO 6ZU9 9N6Z 3J6Y 3J6X 4V8Y 3J78 3J77 6LQT 5JUS 6RBE 9N70 7D5S 7D5T 9N73 6LQV 6ZQF 9N72 6ZQE 4V8Z 5TZS 5WYJ 6LQR 4V7R 4V7R 7D63 5DAT 5DGV 5DGE 5DGF 5TGA 5DC3 5DAT 5DGV 5DGE 5TGA 5DGF 5FCI 5DC3 5FCI 8CCS 8CIV 5JUU 4U4R 4U3U 4U4R 4U3U 4U3M 4U4Q 4U4U 4U52 4U3M 4U6F 4U52 4U4N 4U4U 4U4Q 4U6F 4U4Z 4U4Y 4U3N 4U55 4U4Z 4U4N 4U3N 4U50 4U51 4U4Y 4U51 4U55 4U50 4U53 4U53 4U56 4U56 4U4O 4U4O 8CDL 8CKU 8CMJStructures from NR_all_03510.73