5D8B Summary
- Structure title
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Authors
- Release date
- 2015-10-14
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
- Chains
- 12 RNA chains from Thermus thermophilus, Escherichia coli, synthetic construct
- 98 other chains
- Nucleic acid compounds
- Other compounds
- 5S ribosomal RNA, tRNA, tRNA, tRNA, mRNA, mRNA, 16S ribosomal RNA, 23S ribosomal RNA, 5S ribosomal RNA, tRNA, 16S ribosomal RNA, 23S ribosomal RNA
- 50S ribosomal protein L2, 50S ribosomal protein L34, 50S ribosomal protein L6, 30S ribosomal protein S4, 50S ribosomal protein L3, 50S ribosomal protein L35, 50S ribosomal protein L9, 30S ribosomal protein S5, 50S ribosomal protein L4, 30S ribosomal protein S2, 50S ribosomal protein L11, 30S ribosomal protein S6, 50S ribosomal protein L5, 30S ribosomal protein S3, 50S ribosomal protein L13, 30S ribosomal protein S7, 50S ribosomal protein L6, 30S ribosomal protein S4, 50S ribosomal protein L14, 30S ribosomal protein S8, 50S ribosomal protein L9, 30S ribosomal protein S5, 50S ribosomal protein L15, 30S ribosomal protein S9, 50S ribosomal protein L11, 30S ribosomal protein S6, 50S ribosomal protein L16, 30S ribosomal protein S10, 50S ribosomal protein L13, 30S ribosomal protein S7, 50S ribosomal protein L17, 30S ribosomal protein S11, 50S ribosomal protein L14, 30S ribosomal protein S8, 50S ribosomal protein L18, 30S ribosomal protein S12, 50S ribosomal protein L15, 30S ribosomal protein S9, 50S ribosomal protein L19, 30S ribosomal protein S13, 50S ribosomal protein L16, 30S ribosomal protein S10, 50S ribosomal protein L20, 30S ribosomal protein S14, 50S ribosomal protein L17, 30S ribosomal protein S11, 50S ribosomal protein L21, 30S ribosomal protein S15, 50S ribosomal protein L18, 30S ribosomal protein S12, 50S ribosomal protein L22, 30S ribosomal protein S16, 50S ribosomal protein L19, 30S ribosomal protein S13, 50S ribosomal protein L23, 30S ribosomal protein S17, 50S ribosomal protein L20, 30S ribosomal protein S14, 50S ribosomal protein L24, 30S ribosomal protein S18, 50S ribosomal protein L21, 30S ribosomal protein S15, 50S ribosomal protein L25, 30S ribosomal protein S19, 50S ribosomal protein L22, 30S ribosomal protein S16, 50S ribosomal protein L27, 30S ribosomal protein S20, 50S ribosomal protein L23, 30S ribosomal protein S17, 50S ribosomal protein L28, 30S ribosomal protein Thx, 50S ribosomal protein L24, 30S ribosomal protein S18, 50S ribosomal protein L29, 50S ribosomal protein L31, 50S ribosomal protein L25, 30S ribosomal protein S19, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L27, 30S ribosomal protein S20, 50S ribosomal protein L32, 50S ribosomal protein L28, 30S ribosomal protein Thx, 50S ribosomal protein L33, 50S ribosomal protein L29, 50S ribosomal protein L2, 50S ribosomal protein L34, 50S ribosomal protein L30, 50S ribosomal protein L3, 50S ribosomal protein L35, 50S ribosomal protein L32, 50S ribosomal protein L4, 30S ribosomal protein S2, 50S ribosomal protein L33, 50S ribosomal protein L5, 30S ribosomal protein S3
Pairwise Interactions
Interactions annotated by FR3D:- 3,300 base-pairs
- 9,582 base-stacking
- 900 base-phosphate
- 921 base-ribose
- 385 oxygen stacking
- 425 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 5D8B contains:- 255 hairpin loops from 0 motif groups
- 436 internal loops from 0 motif groups
- 140 junction loops from 0 motif groups
3D Redundancy
5D8B has chains which belong to the following equivalence classes in the current representative set:- NR_all_97519.81 (2)
- NR_all_42622.81 (2)
- NR_all_65795.88 (2)
- NR_all_35542.170 (4)
- NR_all_97014.3 (2)
- NR_4.0_97519.81 (2)
- NR_4.0_42622.81 (2)
- NR_4.0_65795.88 (2)
- NR_4.0_35542.170 (4)
- NR_4.0_97014.3 (2)
- NR_20.0_97519.81 (2)
- NR_20.0_42622.81 (2)
- NR_20.0_65795.88 (2)
- NR_20.0_35542.170 (4)
- NR_20.0_97014.3 (2)
Similar structures
9NO7 9DFE 8VTW 7RQB 9D0J 9DFC 8VTW 9MTP 8FC6 9Q6T 8FC5 9MTQ 8FC3 9MTS 8UD7 9DFD 9Q6P 9D0H 9D0I 8G2C 5FDV 9O3K 8FC2 8FC5 8G2A 9MTT 5FDU 8VTY 8FC1 9D0G 8G29 7RQB 9DFE 8VTU 9Q6V 8FC6 8UD7 8VTX 7U2J 9MTR 8FC2 8G2A 8UD6 4Y4O 9Q6U 9D7R 9DFC 8UD8 8G2C 5DFE 5HCQ 12DQ 8T8B 8EKB 9D7T 8G2B 6CFL 9D7S 8G29 4Y4O 8FC3 4WPO 8VTV 7U2H 6CAE 8UVS 7RQE 8VTU 9DFD 5DFE 8VTY 9O3J 5IBB 8FC4 9Q6R 9MTQ 5FDV 8UVR 9O3H 6XHX 8T8C 5FDU 4V8I 4WQR 5E81 9Q6T 8UD8 7RQ8 5W4K 5IB7 8VTX 9MTP 9Q6Q 8EV7 5IB8 9O3L 6CFK 6XHY 8VTV 7U2J 8G2B 8UD6 5IBB 4V95 9MTT 9Q6S 7RQC 6XHX 5E81 5HCR 4Z8C 4WSM 12DP 5J4B 9MTS 8EKB 6OF1 4WQ1 4WQU 9O3I 4WSM 7U2I 6XHY 4WSD 7RQE 5NDK 6CFL 8T8B 8UVR 8CVK 6XHW 5NDK 4LNT 7MD7 4WT1 4WQ1 10PX 4WZD 4W2G 5IB7 8EV6 9MTR 6CFJ 4W2I 5J4C 8FC1 7RQD 5EL7 6CAE 9Q6V 4V8G 7U2H 5J4B 5HD1 5HCP 5EL6 6XHV 9D0J 4WQF 6ND5 1VY4 4V9R 8FC4 9Q6U 6QNR 7RQC 8UVS 4WPO 5J8B 4WT8 4Z3S 4Z8C 8G2D 4V9H 8CVJ 4LNT 4V8D 8EV7 9B00 4V5J 5WIS 4WQY 7AZO 5EL4 4W2H 4WQR 6XQD 8T8C 4WR6 9O3K 5HAU 6CFK 6FKR 6O97 8CVK 8CVL 7RQA 5EL6 5J4C 4V8D 6OF1 6XHV 7RQD 12DQ 4V7M 7U2I 6QNQ 4W4G 9D7T 6XHW 4W2F 5VP2 9D7R 4WRA 5EL7 5HAU 4WSD 5HCQ 4ZER 1VY7 8EV6 5V8I 7RQ8 5IB8 9Q6P 5WIT 4W4G 5W4K 1VY5 4V6G 4YZV 9D0I 7JQM 4V9S 7MD7 4Y4P 6CFJ 4WZD 4WRA 6C5L 7RQ9 5DOY 4V8B 5NDJ 4YZV 6FKR 4W2I 5E7K 9Q6Q 4V9B 4WU1 9B00 4V8H 8G2D 4V8G 9Q6R 7RQA 8CVJ 4V5F 4V5F 9O3L 4ZSN 6QNR 4WU1 9D0G 5E7K 4W2G 4WQF 4ZSN 4LT8 5WIS 5VPO 7JQL 8CVL 6O97 4V8E 9O3H 4V95 4L47 4V5R 5HD1 4V9S 9D7S 7RQ9 5NDJ 5EL5 6ND5 4V8A 9O3J 6XQD 4YPB 6C5L 7AZO 4WT8 5HCR 6UO1 4TUD 4YPB 5VP2 4W2F 4V7J 4WQY 4Z3S 4ZER 4V5R 4V9R 6GZQ 4WQU 4WR6 4TUA 6GSK 7AZS 5EL4 1VY6 6ND6 4V90 4V6F 4WZO 4V7J 9Q6S 4V9B 4L47 4WT1 4TUC 6QNQ 5F8K 1VY4 4V5P 4Y4P 5DOY 5HCP 7JQM 6UO1 4V5Q 4V5P 9D0H 4TUA 4V8C 4WRO 4V5E 6XQE 4P6F 7JQL 4V5S 4V6G 4V8H 4V5D 4LSK 4V87 4V8I 4V8C 4W2E 4V8F 4W2H 4V5C 4TUD 1VY5 10PX 4V5Q 4V97 4TUE 4V8B 6ND6 4V51 5CZP 5WIT 12DP 4V87 4V8Q 4V5S 4LT8 4V5J 5DOX 6CZR 6XQE 9O3I 6N9E 6N9F 4TUE 5V8I 4V9I 5CZP 4V51 5ZLU 4V9A 6GSK 4V5E 6N9F 4TUB 4V97 4TUC 7AZS 4V9Q 5VPO 5EL5 1VVJ 4V7K 4V5D 4V7L 4V5K 5DOX 6N9E 4V83 1VY6 4WZO 4V5L 4V7K 5F8K 4V8E 4WRO 4V83 1VY7 4V9Q 7LH5 1VVJ 4LSK 4V7L 4P70 6Q95 4V5K 4TUB 4P70 6UCQ 4L71 6B4V 4P6F 5OT7 4V6F 6UCQ 4V8A 7LH5 8WV1 8WV1 6B4V 4V9K 4V9I 4L71 4V9A 4V5C 4V9K 6CZR 4V8F 4V67 4LEL 4V7Y 5UQ8 4LFZ 6N1D 4LFZ 4V63 4V7X 4V63 4V8J 4V4J 4V7W 4V9L 4V9M 4V7P 4V9M 4V7P 4V84 4LEL 4V5G 4XEJ 4V5G 4V9L 4V67 4V84 4V7Y 4XEJ 6GZZ 6GZZ 4V7M 5UQ7 6N1D 4V4I 4V7W 4V5A 6GZX 4V7X 6GZX 4V5A 4V8J 5IMQ 4V7Z 4V7Z 4V8O 4V4R 4V4S 4V4T 4V68 4V5M 5IMR 4V4Z 4V4X 4V4Y 4V4P 6GSJ 6GSJ 5J4D 4V6A 5J4D 4V8U 4V8N 4V6A 4V8X 4V8U 4V9J 4V9J 4V9N 4V9N 4V8X 4V8N 5A9Z 5AA0 6GSL 6GSL 6BOK 6BOK 6BOH 6BOH 5VPP 5VPP 6OTR 6ORD 6NTA 5J3C 6ORD 6OPE 6NTA 6OTR 5J3C 5J30 6OPE 6BZ6 6BZ6 6OXA 6OJ2 6OJ2 6NUO 6NUO 6OXA 6OF6 6OF6 5J30 6NSH 6NSH 8FON 8FOM 8FOM 6OXI 6NWY 6NWY 8FON 6OXI 6NDK 6BZ7 6BUW 6NDK 6BUW 6BZ7 6BZ8 6BZ8 6O3M 6O3M 6OSI 6OSI 4V42 4V5NStructures from NR_all_42622.81