5DH6 Summary
- Structure title
- Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mg2+
- Authors
- Release date
- 2015-10-07
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
- Chains
- 1 RNA chain from synthetic construct
- 1 hybrid chain
- 0 other chains
- Nucleic acid compounds
- Other compounds
- hammerhead ribozyme, 5'-R(*GP*GP*GP*CP*GP*U)-D(P*C)-R(P*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3'
Pairwise Interactions
Interactions annotated by FR3D:- 21 base-pairs
- 68 base-stacking
- 1 base-phosphate
- 1 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 5DH6 contains:- 2 hairpin loops from 2 motif groups
- 0 internal loops from 0 motif groups
- 1 junction loop from 0 motif groups
3D Redundancy
5DH6 has chains which belong to the following equivalence classes in the current representative set:- NR_all_29795.3 (1) rep
- NR_4.0_29795.3 (1) rep
- NR_3.5_29795.3 (1) rep
- NR_3.0_29795.3 (1) rep
- NR_20.0_29795.3 (1) rep