5HCR Summary
- Structure title
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Authors
- Release date
- 2016-04-06
- Experimental technique
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
- Chains
- 10 RNA chains from Thermus thermophilus, Escherichia virus T4, Escherichia coli
- 100 other chains
- Nucleic acid compounds
- Other compounds
- 23S Ribosomal RNA, 5S Ribosomal RNA, 16S Ribosomal RNA, mRNA, P-site tRNA, 23S Ribosomal RNA, 5S Ribosomal RNA, 16S Ribosomal RNA, mRNA, P-site tRNA
- 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14 type Z, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein Thx, Oncocin 10wt, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14 type Z, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein Thx, Oncocin 10wt
Pairwise Interactions
Interactions annotated by FR3D:- 3,718 base-pairs
- 9,379 base-stacking
- 232 base-phosphate
- 275 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 5HCR contains:- 218 hairpin loops from 0 motif groups
- 371 internal loops from 0 motif groups
- 127 junction loops from 0 motif groups
3D Redundancy
5HCR has chains which belong to the following equivalence classes in the current representative set:- NR_all_35542.154 (2)
- NR_all_65795.85 (2)
- NR_all_97519.78 (2)
- NR_all_42622.78 (2)
- NR_4.0_35542.154 (2)
- NR_4.0_65795.85 (2)
- NR_4.0_97519.78 (2)
- NR_4.0_42622.78 (2)
- NR_3.5_35542.154 (2)
- NR_3.5_65795.85 (2)
- NR_3.5_97519.78 (2)
- NR_3.5_42622.78 (2)
- NR_3.0_35542.154 (2)
- NR_3.0_65795.85 (2)
- NR_3.0_97519.78 (2)
- NR_3.0_42622.78 (2)
- NR_20.0_35542.154 (2)
- NR_20.0_65795.85 (2)
- NR_20.0_97519.78 (2)
- NR_20.0_42622.78 (2)
Similar structures
9NO7 9DFE 9D0J 9DFE 8VTW 9DFC 8VTW 9MTP 9MTQ 9DFD 9MTS 7RQB 7RQB 9MTT 9O3K 8FC6 8FC5 8FC6 9DFC 8FC5 9D0J 8FC2 8FC3 8FC2 9MTQ 8VTY 9D7R 9MTP 8UD7 9MTS 9DFD 8FC1 8FC3 4Y4O 8G2A 8G2C 4Y4O 9MTT 8VTY 9D7T 8VTU 9D7S 8UD7 8FC1 9MTR 9O3K 5FDV 8G2A 5FDU 8G2C 9O3H 8UD6 8VTU 8G29 9O3J 5HCQ 8VTX 5HCQ 7U2J 8UD8 8T8B 4V8I 8VTV 5FDV 7RQE 8G2B 6CAE 8UD6 5FDU 8EKB 7U2H 9D7R 8G29 4V9H 8UVS 8T8B 7RQE 7U2J 8VTX 6CFL 6XHX 5DFE 5IBB 5IB7 4WPO 9O3L 4V8I 6XHX 6CAE 8UD8 8UVR 7U2H 4WZD 8VTV 7RQ8 9MTR 8EKB 9D7T 4WQ1 8G2B 9D7S 8FC4 6CFL 5IBB 8T8C 5DFE 5E81 8EV7 7RQ8 4WQ1 4WQR 8UVR 4WSM 4WZD 4V95 8T8C 5IB7 6XHY 9O3J 8FC4 9O3H 6CFK 4Z8C 8UVS 5E81 7RQC 4WSM 5W4K 4WPO 9O3I 6XHY 4WQR 5IB8 7RQC 6CFK 8EV7 4Z8C 4WSD 6OF1 7AZO 5IB8 9O3L 5J4B 5NDK 5J4B 6CFJ 7U2I 4WSD 7AZO 5EL7 4WQU 7MD7 8CVK 6XHW 1VY4 6QNR 5W4K 7RQD 4V9R 1VY4 5J8B 5WIS 7U2I 5NDK 5EL7 4WQF 4V95 6OF1 4LNT 5J4C 8EV6 4V8G 5EL6 7MD7 4W2I 7RQD 4V8D 6XHV 5EL4 6XHW 5HCP 4V9S 4V8G 5J4C 4W2G 8G2D 5HD1 4W2H 5HD1 6QNQ 4W2H 4V6G 4V9R 4W4G 8CVK 4Z3S 5HCP 4W2G 5EL6 6CFJ 4WT1 6FKR 9B00 8CVJ 4WT1 4W2I 6ND5 4W4G 4WT8 8EV6 4V9S 4V7M 4V5F 8G2D 6XHV 4V5J 6QNR 7RQA 9O3I 6XQD 5WIS 6QNQ 5EL4 5HAU 4Z3S 4WT8 4V8H 6C5L 4LNT 4V5F 4V8H 4WR6 6C5L 5HAU 7RQA 6ND5 4V8D 4WRA 4WU1 4WQF 4WR6 4WU1 4V6G 4WRA 4W2F 4W2F 6FKR 6XQD 4V8B 8CVL 9B00 8CVJ 5E7K 6O97 4WQU 4ZER 4Y4P 4WQY 5NDJ 4V7J 1VY5 1VY7 5V8I 5WIT 5VP2 7RQ9 4V5J 4Y4P 5E7K 1VY5 8CVL 4ZER 4V7J 7JQM 5DOY 4V9B 5EL5 6O97 5EL5 5DOY 4V9B 7RQ9 1VY7 4L47 4YZV 6GZQ 5NDJ 4YZV 4V8B 4V5R 4V5R 4YPB 7JQM 5WIT 5VP2 7AZS 4YPB 4WZO 7JQL 5V8I 1VY6 7AZS 4V87 4WQY 1VY6 4TUD 4ZSN 4L47 4ZSN 6ND6 7JQL 4TUA 4V5E 4V5E 4V8A 5VPO 4TUD 4P6F 4WZO 4V7K 4TUE 4V8Q 4WRO 4TUC 6GSK 4V5P 4V5D 4V5K 6UO1 4V7K 4V5C 4TUA 4V87 4WRO 6ND6 4TUE 4V8C 4V83 4V5P 5F8K 4V5Q 4V5S 4LT8 4TUC 4V5S 4LSK 6UO1 4V83 4V8A 6XQE 4V5C 4V5D 4V8C 6GSK 4P6F 4V8E 4V5K 4V5Q 5VPO 4TUB 4V51 5F8K 4V97 4V5L 4LT8 4V6F 4V51 4V90 6XQE 4V7M 4W2E 4V9I 4V8F 4TUB 4V8E 7LH5 4V9A 4V9A 4LSK 4V9Q 4V7Y 1VVJ 4V9I 5DOX 7LH5 5CZP 4V6F 4V8F 4V7Y 5CZP 4V9Q 5DOX 4V97 1VVJ 6B4V 4V9K 4XEJ 4V9K 6N9E 4V7X 6N9F 6Q95 6N9E 5OT7 6N9F 6N1D 4P70 6CZR 4L71 4XEJ 6N1D 6B4V 4V7L 4V84 4P70 4V7X 4LFZ 4V84 8WV1 8WV1 4L71 4V7W 5UQ8 4LFZ 4V67 4V7W 6UCQ 4V7P 4V7P 6CZR 4V67 4V7L 6UCQ 5ZLU 5D8B 4V63 5D8B 4LEL 4V63 4V9L 4V9M 4V9L 4LEL 4V9M 4V8J 4V8J 4V7Z 4V4J 4V5G 4V5G 4V7Z 6GZZ 6GZZ 4V4I 5UQ7 4V5A 4V5A 6GZX 6GZX 4V8O 5IMQ 4V68 4V5M 5IMR 4V4R 4V4S 4V4T 4V4X 4V4Z 4V4Y 6GSJ 6GSJ 5J4D 5J4D 4V8N 4V8X 4V8X 4V6A 4V8N 4V9N 4V9N 4V6A 4V8U 4V8U 4V4P 4V9J 4V9J 5A9Z 5AA0 6GSL 6GSL 6BOK 6BOK 6BOH 6BOH 5VPP 5VPP 5J3C 6OTR 6ORD 5J3C 6OTR 6ORD 6OPE 6OPE 6NTA 6NTA 6BZ6 6BZ6 6OJ2 6OJ2 6OF6 5J30 6OF6 6NUO 5J30 6OXA 6NUO 6OXA 6NSH 6NSH 6OXI 6OXI 6BUW 8FOM 8FOM 6BUW 6NWY 8FON 6NWY 8FON 6NDK 6NDK 6BZ8 6BZ8 6BZ7 6BZ7 6O3M 6O3M 6OSI 6OSI 4V42 4V5NStructures from NR_all_97519.78