6D2U Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6D2U_001 | 1/B/30:34 | No text annotation | geometric HL_2ZNI_001 HL_75660.9 | |
| HL_6D2U_002 | 2/B/30:34 | No text annotation | ||
| HL_6D2U_003 | 3/B/29:36 | No text annotation | ||
| HL_6D2U_004 | 4/B/30:34 | No text annotation | ||
| HL_6D2U_005 | 5/B/29:36 | No text annotation | geometric HL_1KH6_003 HL_33487.2 | |
| HL_6D2U_006 | 6/B/29:36 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6D2U_007 | 7/B/29:36 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6D2U_008 | 8/B/30:34 | No text annotation | ||
| HL_6D2U_009 | 9/B/29:36 | No text annotation | ||
| HL_6D2U_011 | 10/B/29:36 | No text annotation | ||
| HL_6D2U_010 | 10/B/30:34 | No text annotation |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6D2U_001 | 1/B/22:26, 1/B/39:40 | Multiple bulged bases | geometric IL_6CZR_117 NA | |
| IL_6D2U_002 | 1/B/29:30, 1/B/34:36 | No text annotation | ||
| IL_6D2U_003 | 2/B/22:26, 2/B/39:40 | Stack outside cWW | geometric IL_5LYS_006 IL_77710.2 | |
| IL_6D2U_004 | 2/B/29:30, 2/B/34:36 | Single bulged A | geometric IL_7RQB_069 NA | |
| IL_6D2U_005 | 3/B/22:26, 3/B/39:40 | Multiple bulged bases | geometric IL_6CZR_117 NA | |
| IL_6D2U_006 | 4/B/22:26, 4/B/39:40 | Multiple bulged bases | geometric IL_6DLR_004 IL_77710.2 | |
| IL_6D2U_007 | 4/B/29:30, 4/B/34:36 | No text annotation | ||
| IL_6D2U_008 | 5/B/22:26, 5/B/39:40 | Multiple bulged bases | geometric IL_6DLR_004 IL_77710.2 | |
| IL_6D2U_009 | 6/B/22:26, 6/B/39:40 | Multiple bulged bases | geometric IL_6DLR_004 IL_77710.2 | |
| IL_6D2U_010 | 7/B/22:26, 7/B/39:40 | Multiple bulged bases | geometric IL_6DLR_004 IL_77710.2 | |
| IL_6D2U_011 | 8/B/22:26, 8/B/39:40 | Stack outside cWW | geometric IL_5LYS_006 IL_77710.2 | |
| IL_6D2U_012 | 8/B/29:30, 8/B/34:36 | Single bulged A | geometric IL_7RQB_069 NA | |
| IL_6D2U_013 | 9/B/22:26, 9/B/39:40 | Multiple bulged bases | geometric IL_5T83_004 IL_77710.2 | |
| IL_6D2U_014 | 10/B/22:26, 10/B/39:40 | Major groove intercalation | geometric IL_5LYS_007 IL_77710.2 | |
| IL_6D2U_015 | 10/B/29:30, 10/B/34:36 | No text annotation |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
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