6HCM Summary
- Structure title
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Authors
- Release date
- 2018-10-17
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
- Chains
- 6 RNA chains from Oryctolagus cuniculus
- 81 other chains
- Nucleic acid compounds
- Other compounds
- P-site tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, mRNA
- nascent chain, Ribosomal protein L8, uS2, uL3, 40S ribosomal protein S3a, uL4, uS5, 60S ribosomal protein L5, uS3, 60S ribosomal protein L6, eS4, uL30, Ribosomal protein S5, eL8, 40S ribosomal protein S6, uL6, 40S ribosomal protein S7, 60S ribosomal protein L10, eS8, Ribosomal protein L11, Ribosomal protein S9 (Predicted), eS10, eL13, Ribosomal protein S11, Ribosomal protein L14, 40S ribosomal protein S12, Ribosomal protein L15, uS15, uL13, uS11, uL22, uS19, eL18, Ribosomal protein S16, eL19, eS17, eL20, uS13, eL21, eS19, eL22, uS10, Ribosomal protein L23, eS21, eL24, Ribosomal protein S15a, uL23, uS12, Ribosomal protein L26, eS24, eL27, eS25, uL15, eS26, eL29, 40S ribosomal protein S27, eL30, Ribosomal protein S28, eL31, uS14, eL32, 40S ribosomal protein S30, eL33, Ribosomal protein S27a, eL34, RACK1, uL29, 60S ribosomal protein L36, eRF1(AAQ), Ribosomal protein L37, ATP binding cassette subfamily E member 1, eL38, eL39, eL40, eL41, eL42, eL43, eL28, uL10, Ribosomal protein L12, Ribosomal protein
Pairwise Interactions
Interactions annotated by FR3D:- 865 base-pairs
- 4,739 base-stacking
- 58 base-phosphate
- 71 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 6HCM contains:- 179 hairpin loops from 0 motif groups
- 360 internal loops from 0 motif groups
- 105 junction loops from 0 motif groups
3D Redundancy
6HCM has chains which belong to the following equivalence classes in the current representative set:- NR_all_06650.40 (1)
- NR_all_10255.40 (1)
- NR_all_68467.15 (1)
- NR_all_21280.37 (1)
- NR_all_62468.1 (1)
- NR_20.0_06650.40 (1)
- NR_20.0_10255.40 (1)
- NR_20.0_68467.15 (1)
- NR_20.0_21280.37 (1)
- NR_20.0_62468.1 (1)