6SV4 Summary
- Structure title
- The cryo-EM structure of SDD1-stalled collided trisome.
- Authors
- Release date
- 2020-03-04
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
- Chains
- 17 RNA chains from Saccharomyces cerevisiae
- 225 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA, 18S rRNA, 18S rRNA, 25S rRNA, 5S rRNA, 5.8S rRNA, 25S rRNA, 5S rRNA, 5.8S rRNA, 25S rRNA, 5S rRNA, 5.8S rRNA, tRNA (P/E), tRNA (P/E), tRNA (P/P), tRNA (A/P), tRNA (A/P)
- 40S ribosomal protein S3, 60S ribosomal protein L8-A, 60S ribosomal protein L23-A, 60S ribosomal protein L36-A, 60S ribosomal protein L9-A, 60S ribosomal protein L24-A, 60S ribosomal protein L37-A, 60S ribosomal protein L11-A, 60S ribosomal protein L25, 60S ribosomal protein L38, 60S ribosomal protein L13-A, 60S ribosomal protein L26-A, 60S ribosomal protein L39, 60S ribosomal protein L14-A, 60S ribosomal protein L27-A, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L42-A, 60S ribosomal protein L15-A, 60S ribosomal protein L28, 60S ribosomal protein L41-B, 60S ribosomal protein L43-A, 60S ribosomal protein L16-A, 60S ribosomal protein L29, 60S ribosomal protein L2-A, 60S ribosomal protein L17-A, 60S ribosomal protein L30, 40S ribosomal protein S3, 40S ribosomal protein S3, Rps5p, 60S ribosomal protein L3, 60S ribosomal protein L18-A, 60S ribosomal protein L31-A, 60S ribosomal protein L10, 60S ribosomal protein L4-A, 60S ribosomal protein L19-A, 60S ribosomal protein L32, 60S ribosomal protein L20-A, 60S ribosomal protein L5, 60S ribosomal protein L21-A, 60S ribosomal protein L33-A, 60S ribosomal protein L22-A, 60S ribosomal protein L6-A, 60S ribosomal protein L34-A, 60S ribosomal protein L7-A, 60S ribosomal protein L35-A, 60S acidic ribosomal protein P0, Rps5p, Rps5p, 40S ribosomal protein S10-A, 40S ribosomal protein S10-A, 40S ribosomal protein S10-A, 40S ribosomal protein S12, 40S ribosomal protein S12, 40S ribosomal protein S12, 40S ribosomal protein S15, 40S ribosomal protein S15, 40S ribosomal protein S15, 40S ribosomal protein S16-A, 40S ribosomal protein S16-A, 40S ribosomal protein S16-A, 40S ribosomal protein S17-B, 40S ribosomal protein S17-B, 40S ribosomal protein S17-B, 40S ribosomal protein S18-A, 40S ribosomal protein S18-A, 40S ribosomal protein S18-A, 40S ribosomal protein S19-A, 40S ribosomal protein S19-A, 40S ribosomal protein S19-A, 40S ribosomal protein S20, 40S ribosomal protein S20, 40S ribosomal protein S20, 40S ribosomal protein S25-A, 40S ribosomal protein S25-A, 40S ribosomal protein S25-A, 40S ribosomal protein S28-B, 40S ribosomal protein S28-B, 40S ribosomal protein S28-B, 40S ribosomal protein S29-A, 40S ribosomal protein S29-A, 40S ribosomal protein S29-A, Ubiquitin-40S ribosomal protein S31, Ubiquitin-40S ribosomal protein S31, Ubiquitin-40S ribosomal protein S31, Guanine nucleotide-binding protein subunit beta-like protein, Guanine nucleotide-binding protein subunit beta-like protein, Guanine nucleotide-binding protein subunit beta-like protein, 40S ribosomal protein S0-A, 40S ribosomal protein S0-A, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, 40S ribosomal protein S1-A, 40S ribosomal protein S1-A, 40S ribosomal protein S2, 40S ribosomal protein S2, 40S ribosomal protein S2, 40S ribosomal protein S4-A, 40S ribosomal protein S4-A, 40S ribosomal protein S4-A, 40S ribosomal protein S6-A, 40S ribosomal protein S6-A, 40S ribosomal protein S6-A, 40S ribosomal protein S7-A, 40S ribosomal protein S7-A, 40S ribosomal protein S7-A, 40S ribosomal protein S8-A, 40S ribosomal protein S8-A, 40S ribosomal protein S8-A, 40S ribosomal protein S9-A, 40S ribosomal protein S9-A, 40S ribosomal protein S9-A, 40S ribosomal protein S11-A, 60S ribosomal protein L8-A, 60S ribosomal protein L23-A, 60S ribosomal protein L36-A, 60S ribosomal protein L9-A, 60S ribosomal protein L24-A, 60S ribosomal protein L37-A, 60S ribosomal protein L11-A, 60S ribosomal protein L25, 60S ribosomal protein L38, 60S ribosomal protein L13-A, 60S ribosomal protein L26-A, 60S ribosomal protein L39, 60S ribosomal protein L14-A, 60S ribosomal protein L27-A, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L42-A, 60S ribosomal protein L15-A, 60S ribosomal protein L28, 60S ribosomal protein L41-B, 60S ribosomal protein L43-A, 60S ribosomal protein L16-A, 60S ribosomal protein L29, 60S ribosomal protein L2-A, 60S ribosomal protein L17-A, 60S ribosomal protein L30, 40S ribosomal protein S11-A, 40S ribosomal protein S11-A, 40S ribosomal protein S13, 60S ribosomal protein L3, 60S ribosomal protein L18-A, 60S ribosomal protein L31-A, 60S ribosomal protein L10, 60S ribosomal protein L4-A, 60S ribosomal protein L19-A, 60S ribosomal protein L32, 60S ribosomal protein L20-A, 60S ribosomal protein L5, 60S ribosomal protein L21-A, 60S ribosomal protein L33-A, 60S ribosomal protein L22-A, 60S ribosomal protein L6-A, 60S ribosomal protein L34-A, 60S ribosomal protein L7-A, 60S ribosomal protein L35-A, 60S acidic ribosomal protein P0, 40S ribosomal protein S13, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 60S ribosomal protein L3, 60S ribosomal protein L18-A, 60S ribosomal protein L31-A, 60S ribosomal protein L10, 60S ribosomal protein L4-A, 60S ribosomal protein L19-A, 60S ribosomal protein L32, 60S ribosomal protein L20-A, 60S ribosomal protein L5, 60S ribosomal protein L21-A, 60S ribosomal protein L33-A, 60S ribosomal protein L22-A, 60S ribosomal protein L6-A, 60S ribosomal protein L34-A, 60S ribosomal protein L7-A, 60S ribosomal protein L35-A, 60S acidic ribosomal protein P0, 40S ribosomal protein S14-A, 40S ribosomal protein S14-A, 40S ribosomal protein S21-A, 40S ribosomal protein S21-A, 40S ribosomal protein S21-A, 40S ribosomal protein S22-A, 40S ribosomal protein S22-A, 40S ribosomal protein S22-A, 40S ribosomal protein S23-A, 40S ribosomal protein S23-A, 40S ribosomal protein S23-A, 40S ribosomal protein S24-A, 40S ribosomal protein S24-A, 40S ribosomal protein S24-A, 40S ribosomal protein S26-A, 40S ribosomal protein S26-A, 40S ribosomal protein S26-A, 40S ribosomal protein S27-A, 40S ribosomal protein S27-A, 40S ribosomal protein S27-A, 40S ribosomal protein S30-A, 40S ribosomal protein S30-A, 40S ribosomal protein S30-A, 60S ribosomal protein L8-A, 60S ribosomal protein L23-A, 60S ribosomal protein L36-A, 60S ribosomal protein L9-A, 60S ribosomal protein L24-A, 60S ribosomal protein L37-A, 60S ribosomal protein L11-A, 60S ribosomal protein L25, 60S ribosomal protein L38, 60S ribosomal protein L13-A, 60S ribosomal protein L26-A, 60S ribosomal protein L39, 60S ribosomal protein L14-A, 60S ribosomal protein L27-A, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L42-A, 60S ribosomal protein L15-A, 60S ribosomal protein L28, 60S ribosomal protein L41-B, 60S ribosomal protein L43-A, 60S ribosomal protein L16-A, 60S ribosomal protein L29, 60S ribosomal protein L2-A, 60S ribosomal protein L17-A, 60S ribosomal protein L30
Pairwise Interactions
Interactions annotated by FR3D:- 5,392 base-pairs
- 15,604 base-stacking
- 240 base-phosphate
- 325 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 6SV4 contains:- 372 hairpin loops from 0 motif groups
- 759 internal loops from 0 motif groups
- 221 junction loops from 0 motif groups
3D Redundancy
6SV4 has chains which belong to the following equivalence classes in the current representative set:- NR_all_38961.7 (2) rep
- NR_all_03510.70 (3)
- NR_all_90506.81 (3)
- NR_all_18586.76 (3)
- NR_all_11689.8 (2)
- NR_all_60125.7 (1)
- NR_4.0_38961.7 (2) rep
- NR_4.0_03510.70 (3)
- NR_4.0_90506.81 (3)
- NR_4.0_18586.76 (3)
- NR_4.0_11689.8 (2)
- NR_4.0_60125.7 (1)
- NR_3.5_38961.7 (2) rep
- NR_3.5_03510.70 (3)
- NR_3.5_90506.81 (3)
- NR_3.5_18586.76 (3)
- NR_3.5_11689.8 (2)
- NR_3.5_60125.7 (1)
- NR_20.0_38961.7 (2) rep
- NR_20.0_03510.70 (3)
- NR_20.0_90506.81 (3)
- NR_20.0_18586.76 (3)
- NR_20.0_11689.8 (2)
- NR_20.0_60125.7 (1)
Similar structures
7ZW0 8CDR 8CEH 8T2Y 8C01 8EVP 8CGN 6T4Q 7MPJ 8P9A 8CAH 8T2Z 8P9A 8EWB 6TB3 8T2X 8C00 7N8B 5TBW 9F9S 8EWC 8EVT 4V88 5TBW 8K82 7ZUX 8PNN 8P4V 4V88 7MPI 8CF5 9F9S 8BN3 7ZPQ 8CAS 8P4V 8PNN 6ZVI 8P85 7OSA 6SNT 9G33 6HHQ 6Q8Y 8EVQ 5I4L 5OBM 8ZH3 8ZHC 8P85 8K2D 5MEI 5NDW 5LYB 7RR5 5I4L 8T3D 6T7I 5MEI 5OBM 5ON6 8UTI 6LQP 5LYB 5NDW 6HHQ 5NDV 5ON6 8UT0 5NDV 8CG8 8EVS 8EVR 7OSM 7A1G 6WOO 8T3E 6T7T 6Z6K 6ZQB 8EUB 7WTR 6TNU 5M1J 7ZUW 6FAI 7WTN 6ZQC 6S47 8C83 8T3F 6T83 8T3A 8Z70 7WTL 5NDG 7WTO 5FCJ 8T30 7ZRS 7AJU 7WTM 8T3B 7B7D 7WTP 5NDG 5FCJ 7NRC 8XU8 6Z6J 6XIR 8Y0U 6RBD 6ZQD 7WTQ 7NRD 6XIQ 8ZHB 6ZQG 8ZGY 6KE6 7SUK 6GQV 6T83 6GQB 6LQS 5MC6 7AJT 5LL6 5TGM 6EML 8T3C 8ZGR 6GQ1 5TGM 5JUP 8YLR 6Y7C 6LQU 8BQX 5WLC 7D4I 8YLD 8BQD 6I7O 5JUT 6I7O 8Z71 5WYK 6ZCE 6LQQ 5JUO 6ZU9 3J6Y 3J6X 4V8Y 3J78 3J77 6LQT 5JUS 6RBE 7D5S 7D5T 6LQV 6ZQF 6ZQE 4V8Z 5TZS 5WYJ 6LQR 4V7R 4V7R 4V6I 7D63 5DAT 5DGV 5DGE 5DGF 5TGA 5DC3 5DAT 5DGV 5DGE 5TGA 5DGF 5FCI 5DC3 5FCI 8CCS 8CIV 5JUU 4U4R 4U3U 4U4R 4U3U 4U3M 4U4Q 4U4U 4U52 4U3M 4U6F 4U52 4U4N 4U4U 4U4Q 4U6F 4U4Z 4U4Y 4U3N 4U55 4U4Z 4U4N 4U3N 4U50 4U51 4U4Y 4U51 4U55 4U50 4U53 4U53 4U56 4U56 4U4O 4U4O 8CDL 8CKU 8CMJStructures from NR_all_03510.70