6XIR Summary
- Structure title
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Authors
- Release date
- 2020-08-26
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
- Chains
- 6 RNA chains from Saccharomyces cerevisiae
- 70 other chains
- Nucleic acid compounds
- Other compounds
- 35S ribosomal RNA, 18S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, Transfer RNA, Transfer RNA
- 60S ribosomal protein L2-A, 40S ribosomal protein S10-A, 40S ribosomal protein S11-A, 40S ribosomal protein S13, 40S ribosomal protein S14-B, RPS15 isoform 1, 40S ribosomal protein S16-A, 40S ribosomal protein S17-B, 40S ribosomal protein S18-A, 40S ribosomal protein S19-A, RPS20 isoform 1, 40S ribosomal protein S21-A, RPS22A isoform 1, 40S ribosomal protein S23-A, 40S ribosomal protein S24-A, RPS25A isoform 1, RPS26B isoform 1, 40S ribosomal protein S27-A, RPS28A isoform 1, RPS29A isoform 1, Guanine nucleotide-binding protein subunit beta-like protein, RPL3 isoform 1, RPL4A isoform 1, RPL5 isoform 1, 60S ribosomal protein L6-A, 60S ribosomal protein L7-A, RPL8A isoform 1, RPL9A isoform 1, RPL10 isoform 1, RPL11B isoform 1, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, 60S ribosomal protein L20-A, 60S ribosomal protein L21-A, 60S ribosomal protein L22-A, 60S ribosomal protein L23-A, RPL24A isoform 1, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L27-A, 60S ribosomal protein L28, RPL29 isoform 1, 60S ribosomal protein L30, 60S ribosomal protein L31-A, RPL32 isoform 1, 60S ribosomal protein L33-A, 60S ribosomal protein L34-A, 60S ribosomal protein L35-A, 60S ribosomal protein L36-A, 60S ribosomal protein L37-A, RPL38 isoform 1, 60S ribosomal protein L39, RPL41A isoform 1, 60S ribosomal protein L42-A, 60S ribosomal protein L43-A, 40S ribosomal protein S0-A, RPS1A isoform 1, RPS2 isoform 1, RPS3 isoform 1, 40S ribosomal protein S4-A, Rps5p, 40S ribosomal protein S6-A, 40S ribosomal protein S7-A, RPS8A isoform 1, 40S ribosomal protein S9-A
Pairwise Interactions
Interactions annotated by FR3D:- 1,641 base-pairs
- 4,450 base-stacking
- 96 base-phosphate
- 114 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 6XIR contains:- 129 hairpin loops from 0 motif groups
- 252 internal loops from 0 motif groups
- 70 junction loops from 0 motif groups
3D Redundancy
6XIR has chains which belong to the following equivalence classes in the current representative set:- NR_all_83593.6 (2)
- NR_all_03510.69 (1)
- NR_all_90506.80 (1)
- NR_all_18586.75 (1)
- NR_4.0_83593.6 (2)
- NR_4.0_03510.69 (1)
- NR_4.0_90506.80 (1)
- NR_4.0_18586.75 (1)
- NR_3.5_83593.6 (2)
- NR_3.5_03510.69 (1)
- NR_3.5_90506.80 (1)
- NR_3.5_18586.75 (1)
- NR_20.0_83593.6 (2)
- NR_20.0_03510.69 (1)
- NR_20.0_90506.80 (1)
- NR_20.0_18586.75 (1)
Similar structures
8P9A 8P9A 8PNN 5TBW 8PNN 5TBW 4V88 4V88 8P4V 8P4V 8P85 8P85 7OSA 5I4L 5I4L 5MEI 5MEI 6HHQ 6HHQ 5OBM 5OBM 5LYB 5NDV 5LYB 5ON6 7OSM 5ON6 5NDV 5NDW 5NDW 5FCJ 5FCJ 5NDG 5NDG 5TGM 5TGM 4V7R 4V7R 5DAT 5DGV 5DAT 5DGV 5DGE 5TGA 5DGF 5TGA 5DGF 5DGE 5FCI 5DC3 5FCI 5DC3 8CCS 8CDR 8CEH 8EVT 8T2Y 8CGN 8P8N 8PFR 7ZW0 8AGX 8EVP 7TOP 8ZHC 8T2X 8P8U 8T2Z 8EWC 8BN3 8CIV 8AAF 8EUB 7ZUX 8HFR 8CG8 7UOO 8AGZ 8AGT 8AGV 8AGW 7V08 8EVS 7UQB 8AGU 7UQZ 6T4Q 7TOO 8CF5 8EVQ 8CDL 8ZHB 7MPJ 6WOO 8T3A 6TB3 8ZH3 8ZGR 8EWB 8EVR 8P8M 6SNT 9F9S 7AZY 8T30 8T3D 4U4R 4U4R 8ZGY 8BIP 8K82 9F9S 8T3E 4U3U 4U3U 8T3B 7UG6 8T3F 7N8B 8CKU 7MPI 7ZS5 5T62 4U3M 4U4Q 4U3M 9F58 4U4U 4U4Q 6YLG 9OFV 4U4U 4U52 4U52 7RR5 8K2D 8Z70 6Q8Y 8UT0 7OHQ 5M1J 6T7T 7B7D 4U6F 4U6F 6QIK 6YLH 6TNU 4U4N 7U0H 8UTI 4U4Z 4U4N 4U4Z 6RZZ 6T7I 4U3N 7BTB 4U4Y 4U3N 7BT6 4U55 6R87 6S47 3JCT 4U4Y 4U51 8XU8 4U51 4U55 4U50 4U50 5H4P 6R86 6M62 8V87 5JUP 6HD7 6Z6K 6Z6J 7ZPQ 6RI5 6QT0 6N8M 6N8O 4U53 8Y0U 7OF1 4U53 6R84 6SV4 8Z71 7OH3 6SV4 7Z34 6SV4 7NAC 6N8L 6N8K 8BQX 8BJQ 5APO 6QTZ 6OIG 7R7A 6N8J 4U56 4U56 8BQD 8CMJ 8T3C 8V83 6N8N 8YLD 8YLR 7NRC 5MC6 6GQB 5JUU 6T83 5JUT 5JUO 6T83 6GQV 6S05 8V84 5JUS 6FT6 6XIQ 6ELZ 5APN 5T6R 7ZUW 4U4O 4U4O 7NRD 6YLY 4V8Y 6GQ1 6YLX 5GAK 7ZRS 7OHV 7OHX 6EM1 6EM5 7OHU 6I7O 6I7O 6EM3 7OHY 7OHW 7OHR 7OHP 6C0F 3J6Y 3J6X 7OHS 3J77 6EM4 3J78 4V8Z 7OHT 6CB1 8E5T 5Z3G 4V8T 4V7F 4V6I 5JCSStructures from NR_all_90506.80