- Structure title
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Authors
- Abaeva, I.S., Vicens, Q., Bochler, A., Soufari, H., Simonetti, A., Pestova, T., Hashem, Y., Hellen, C.U.T.
- Release date
- 2020-12-23
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
- Chains
-
5 RNA chains from
Halastavi arva RNA virus, Oryctolagus cuniculus
-
80 other chains
- Nucleic acid compounds
INTERNAL RIBOSOME ENTRY SITE, 18S RIBOSOMAL RNA, 5S RIBOSOMAL RNA, 28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA
- Other compounds
Ribosomal protein L15, Ribosomal protein L30, 60S ribosomal protein L27, 60S RIBOSOMAL PROTEIN EL19, Ribosomal protein, uL3, 60S RIBOSOMAL PROTEIN EL20, eL21, Ribosomal protein L22, 60S RIBOSOMAL PROTEIN UL2, uL29, ribosomal protein uS19, 60S ribosomal protein L36, 40S RIBOSOMAL PROTEIN US9, Ribosomal protein L37, 40S RIBOSOMAL PROTEIN ES17, ribosomal protein eL39, 40S RIBOSOMAL PROTEIN ES21, 60S RIBOSOMAL PROTEIN EL40, S10_plectin domain-containing protein, eL42, ribosomal protein uS15, 60S ribosomal protein L5, Ribosomal protein S11, ribosomal protein uS13, uL22, ribosomal protein uS14, 40S RIBOSOMAL PROTEIN ES19, ribosomal protein eL43, Ribosomal_S10 domain-containing protein, 40S ribosomal protein S24, 60S RIBOSOMAL PROTEIN EL28, Ribosomal protein S15a, 60S acidic ribosomal protein P0, Ribosomal protein L10 (Predicted), 40S ribosomal protein S27, Uncharacterized protein, ribosomal protein eS25, Ribosomal protein S5, 40S RIBOSOMAL PROTEIN ES26, 40S RIBOSOMAL PROTEIN ES7, 40S RIBOSOMAL PROTEIN ES31, Ribosomal_L6e_N domain-containing protein, 60S RIBOSOMAL PROTEIN EL18, 60S ribosomal protein L6, Ribosomal protein S23, uL30, 40S_SA_C domain-containing protein, 60S RIBOSOMAL PROTEIN EL8, 40S ribosomal protein S3a, 60S RIBOSOMAL PROTEIN UL6, S5 DRBM domain-containing protein, Ribosomal protein L10 (Predicted), 60s ribosomal protein l41, Ribosomal protein L11, Ribosomal protein S3, Ribosomal protein L14, ribosomal protein RACK1, 40S RIBOSOMAL PROTEIN US11, 60S ribosomal protein L13, 40S ribosomal protein S6, 40S ribosomal protein S8, Ribosomal protein S9 (Predicted), 40S ribosomal protein S12, ribosomal protein eS28, 40S ribosomal protein S4, eL14, Ribosomal protein L24, 60S RIBOSOMAL PROTEIN UL23, Ribosomal protein L26, 60S RIBOSOMAL PROTEIN EL38, uL15, 60S ribosomal protein L29, 40S RIBOSOMAL PROTEIN ES30, uL4, eL31, eL32, 60S RIBOSOMAL PROTEIN UL13, eL33, eL34
Pairwise Interactions
Interactions annotated by
FR3D:
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RNA 3D Motifs
In the current release of the
RNA 3D Motif Atlas, 6ZVK contains:
-
132 hairpin loops from 0 motif groups
-
297 internal loops from 0 motif groups
-
85 junction loops from 0 motif groups
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3D Redundancy
6ZVK has chains which belong to the following equivalence classes in the current representative set:
Similar structures
None found
