7O81 Summary
- Structure title
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Authors
- Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.
- Release date
- 2021-06-02
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
- Chains
- 7 RNA chains from Oryctolagus cuniculus, Severe acute respiratory syndrome coronavirus 2, Bos taurus
- 80 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA, mRNA containing SARS-CoV-2 sequence, A-site Met-tRNA(Met), P-site tRNA(Pro), 28S rRNA, 5S rRNA, 5.8S rRNA
- 40S ribosomal protein S27, Ribosomal protein S28, Ribosomal protein S27a, 40S ribosomal protein S30, Ribosomal protein eS26, RACK1, uS14, EDF1, 40S ribosomal protein SA, 40S ribosomal protein S3a, Ribosomal protein uS5, 40S ribosomal protein S3, Ribosomal protein eS4, Ribosomal protein S5, 40S ribosomal protein S6, 40S ribosomal protein S7, 40S ribosomal protein S8, Ribosomal protein S9 (Predicted), Ribosomal protein eS10, 40S ribosomal protein S11, 40S ribosomal protein S12, uS15, 40S ribosomal protein uS11, 40S ribosomal protein uS19, uS9, 40S ribosomal protein eS17, 40S ribosomal protein S18, Ribosomal protein eS19, 40S ribosomal protein uS10, Ribosomal protein eS21, Ribosomal protein S15a, 40S ribosomal protein S23, 40S ribosomal protein S24, 40S ribosomal protein S25, 60s ribosomal protein l41, Ribosomal protein uL2, Ribosomal protein L3, 60S ribosomal protein L4, Ribosomal_L18_c domain-containing protein, 60S ribosomal protein L6, Ribosomal Protein uL30, Ribosomal protein eL8, 60S ribosomal protein L9, 60S ribosomal protein L10, Ribosomal protein L11, Replicase polyprotein 1ab, Ribosomal protein eL13, Ribosomal protein L14, Ribosomal protein L15, Ribosomal protein L13a, uL22, Ribosomal protein L18, 60S ribosomal protein L19, Ribosomal protein L18a, eL21, Ribosomal protein eL22, Ribosomal protein L23, eL24, uL23, Ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L27a, 60S ribosomal protein L29, eL30, eL31, eL32, eL33, 60S ribosomal protein L34, uL29, 60S ribosomal protein L36, Ribosomal protein L37, eL38, eL39, 60S ribosomal protein L40, eL42, eL43, Ribosomal protein eL28, 60S acidic ribosomal protein P0, Ribosomal protein L12, Ribosomal protein uL1
Pairwise Interactions
Interactions annotated by FR3D:- 2,211 base-pairs
- 6,134 base-stacking
- 93 base-phosphate
- 115 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 7O81 contains:- 134 hairpin loops from 0 motif groups
- 358 internal loops from 0 motif groups
- 81 junction loops from 0 motif groups
3D Redundancy
7O81 has chains which belong to the following equivalence classes in the current representative set:- NR_all_06650.40 (1)
- NR_all_10255.40 (1)
- NR_all_21280.37 (1)
- NR_all_06465.1 (1) rep
- NR_all_27000.1 (1) rep
- NR_4.0_06650.40 (1)
- NR_4.0_10255.40 (1)
- NR_4.0_21280.37 (1)
- NR_4.0_06465.1 (1) rep
- NR_4.0_27000.1 (1) rep
- NR_3.5_06650.40 (1)
- NR_3.5_10255.40 (1)
- NR_3.5_21280.37 (1)
- NR_3.5_06465.1 (1) rep
- NR_3.5_27000.1 (1) rep
- NR_20.0_06650.40 (1)
- NR_20.0_10255.40 (1)
- NR_20.0_21280.37 (1)
- NR_20.0_06465.1 (1) rep
- NR_20.0_27000.1 (1) rep
Similar structures
4KZY 4KZZ 4KZX 7O7Y 7O7Z 7OYD 8SCB 7ZJW 9QQA 7O80 8P2K 7JQB 7UCK 9BDL 9F1B 6SGC 7TOR 8P03 7ZJX 9C8K 7NWI 7UCJ 6YAL 8BHF 9F1D 6R5Q 9BDN 7TOQ 6ZVK 6P5I 6P5K 6P5J 6P4G 7MDZ 6R6P 6P4H 6P5N 6D9J 8VFT 7JQC 8BTK 9QQB 6W2T 8P09 7A01 5LZS 6MTD 5LZV 6D90 6MTC 6MTE 7SYS 6YAN 6W2S 6GZ5 7SYR 5LZZ 9F1C 5LZW 6GZ3 7SYX 7SYW 6MTB 7NWG 9BDP 6GZ4 5LZT 6YAM 5LZX 6HCJ 7SYQ 6R6G 5LZU 6HCF 7SYV 6R7Q 3JAH 7SYN 7SYP 7NWH 5FLX 5LZY 3JAG 3JAI 7SYG 7SYK 7SYT 7SYI 7SYL 7SYU 7SYH 7SYO 7SYM 7SYJ 5K0Y 6HCQ 6HCM 4UJE 3JAN 3JAJ 4UJD 4D61 4D5L 4UJCStructures from NR_all_21280.37