8B6C Summary
- Structure title
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Authors
- Pauwels, E., Shewakramani, N.R., De Wijngaert, B., Vermeire, K., Das, K.
- Release date
- 2023-02-22
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
- Chains
- 3 RNA chains from Oryctolagus cuniculus
- 44 other chains
- Nucleic acid compounds
- Other compounds
- 28S rRNA, 5S rRNA, 5.8S rRNA
- Ribosomal protein L8, Ribosomal protein L3, 60S ribosomal protein L4, Ribosomal_L18_c domain-containing protein, 60S ribosomal protein L6, 60S ribosomal protein L7, 60S ribosomal protein L7a, 60S ribosomal protein L9, Ribosomal protein L10, 60S ribosomal protein L11, Protein transport protein Sec61 subunit alpha isoform 1, 60S ribosomal protein L13, 60S ribosomal protein L14, Ribosomal protein L15, 60S ribosomal protein L13a, 60S ribosomal protein L17, eL18, 60S ribosomal protein L19, 60S ribosomal protein L18a, 60S ribosomal protein L21, 60S ribosomal protein L22 (Fragment), 60S ribosomal protein L23, Ribosomal protein L24, Ribosomal_L23eN domain-containing protein, Ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L27a, 60S ribosomal protein L29, 60S ribosomal protein L30, 60S ribosomal protein L31, Ribosomal protein L32, 60S ribosomal protein L35a, 60S ribosomal protein L34, 60S ribosomal protein L35, 60S ribosomal protein L36, Ribosomal protein L37, 60S ribosomal protein L38, 60S ribosomal protein L39-like, 60S ribosomal protein L40, 60S ribosomal protein L41, 60S ribosomal protein L36a-like, 60S ribosomal protein L37a, Protein transport protein Sec61 subunit gamma, 60S ribosomal protein L28
Pairwise Interactions
Interactions annotated by FR3D:- 1,479 base-pairs
- 3,987 base-stacking
- 59 base-phosphate
- 92 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8B6C contains:- 85 hairpin loops from 0 motif groups
- 196 internal loops from 0 motif groups
- 47 junction loops from 0 motif groups
3D Redundancy
8B6C has chains which belong to the following equivalence classes in the current representative set:- NR_all_06650.41 (1)
- NR_all_10255.41 (1)
- NR_4.0_06650.41 (1)
- NR_4.0_10255.41 (1)
- NR_3.5_06650.41 (1)
- NR_3.5_10255.41 (1)
- NR_3.0_06650.41 (1)
- NR_3.0_10255.41 (1)
- NR_20.0_06650.41 (1)
- NR_20.0_10255.41 (1)
Similar structures
7O7Y 7O7Z 7OYD 8SCB 7ZJW 7O80 8P2K 8RJB 9QQA 8VVQ 8RJD 8B5L 9BDL 7UCK 8BPO 6SGC 7OBR 9F1B 7QWQ 7O81 7TOR 8RJC 7ZJX 7QWR 8VVP 7TOQ 7NWI 8BHF 8VVT 6R6P 6R5Q 9BDN 6P5I 6P5J 9F1D 6P5K 6ZVK 7UCJ 8VVR 8VVS 6P5N 7MDZ 6D9J 7NFX 7TM3 8BTK 9QQB 6T59 8VFT 8VVV 7A01 6MTD 5LZS 5LZV 7QWS 6MTE 6MTC 6D90 6GZ5 5LZZ 9F1C 6GZ3 5LZW 6MTB 6GZ4 9BDP 5LZT 7NWG 5LZX 6HCJ 6R6G 5LZU 7TUT 6FRK 8VVU 6HCF 3JAH 6R7Q 6FTI 7NWH 3JAG 5LZY 3JAI 3J92 6FTJ 6HCQ 6HCM 4UJE 6FTG 3JAN 3JAJ 4UJD 4D67 4D5Y 4UJCStructures from NR_all_06650.41