RNA 3D Hub //

8BTK Summary

View in PDB or NAKB
Circular interaction diagram PDF
Structure title
Structure of the TRAP complex with the Sec translocon and a translating ribosome
Authors
Jaskolowski, M., Jomaa, A., Gamerdinger, M., Shrestha, S., Leibundgut, M., Deuerling, E., Ban, N.
Release date
2023-05-24
Experimental technique
ELECTRON MICROSCOPY
Resolution
3.5 Å
Chains
6 RNA chains from Oryctolagus cuniculus
86 other chains
Nucleic acid compounds
18S rRNA, mRNA, P-site tRNA, 28S rRNA, 5S rRNA, 5.8S rRNA
Other compounds
40S ribosomal protein S27, Ribosomal protein S28, Ribosomal protein S27a, 40S ribosomal protein S30, eS26, RACK1, uS14, 40S ribosomal protein SA, 40S ribosomal protein S3a, Ribosomal_S5_C domain-containing protein,40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S4, Ribosomal protein S5, 40S ribosomal protein S6, 40S ribosomal protein S7, 40S ribosomal protein S8, Ribosomal protein S9 (Predicted), Ribosomal protein eS10, 40S ribosomal protein S11, 40S ribosomal protein S12, uS15, 40S ribosomal protein S14, 40S ribosomal protein uS19, uS9, 40S ribosomal protein eS17, 40S ribosomal protein S18, 40S ribosomal protein S19, 40S ribosomal protein uS10, 40S ribosomal protein S21, Ribosomal protein S15a, 40S ribosomal protein S23, 40S ribosomal protein S24, 40S ribosomal protein S25, 60S ribosomal protein L41, 60S ribosomal protein L8, Ribosomal protein L3, 60S ribosomal protein L4, Ribosomal_L18_c domain-containing protein, 60S ribosomal protein L6, uL30,60S ribosomal protein L7, 60S ribosomal protein L7a, 60S ribosomal protein L9, Ribosomal protein L10, Ribosomal protein L11, Nascent chain, L13, Ribosomal protein L14, Ribosomal protein L15, 60S ribosomal protein L13a, uL22, eL18, 60S ribosomal protein L19, 60S ribosomal protein L18a, 60S ribosomal protein L21, 60S ribosomal protein L22, Ribosomal protein L23, Ribosomal protein L24, Ribosomal_L23eN domain-containing protein, Ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L27a, 60S ribosomal protein L29, eL30, Ribosomal protein L31, eL32, 60S ribosomal protein L35a, 60S ribosomal protein L34, 60S ribosomal protein L35, 60S ribosomal protein L36, Ribosomal protein L37, eL38, eL39, Ubiquitin, eL42, eL43, 60S ribosomal protein L28, 60S acidic ribosomal protein P0, Ribosomal protein L12, Ribosomal protein uL1, Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit gamma, Protein transport protein Sec61 subunit beta, Translocon-associated protein subunit alpha, Translocon-associated protein subunit beta, Signal sequence receptor subunit 3, Translocon-associated protein subunit delta

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 8BTK contains:
  • 133 hairpin loops from 0 motif groups
  • 386 internal loops from 0 motif groups
  • 78 junction loops from 0 motif groups
More

3D Redundancy

8BTK has chains which belong to the following equivalence classes in the current representative set:

Similar structures

7O7Z 8SCB 7JQB 7UCK 8VVQ 9QQA 9H6Y 9BDL 8P03 7NWI 8P2K 9H74 8VVP 6W2T 9BDN 9F1B 6P4H 7ZJX 6P4G 8P09 7TOR 7O81 7SYS 6W2S 9NDP 6MTC 6MTD 7UCJ 9MR4 6P5I 9F1D 6P5N 7SYW 5LZV 6MTE 9QQB 7JQC 8BHF 6YAL 6MTB 6P5K 7SYQ 5LZZ 6D90 5LZS 6YAN 6ZVK 8VVR 7NWG 6HCF 7SYR 9F1C 8VVS 7SYX 5LZW 5LZT 7SYN 6R5Q 7MDZ 7SYV 6D9J 9BDP 3JAH 8VVT 6R6P 8VFT 6GZ5 6GZ4 7SYK 5LZU 7SYP 3JAG 6P5J 7SYU 7SYG 6GZ3 5LZY 7TOQ 6YAM 3JAI 7SYL 9C8K 8VVV 7SYT 6R6G 7SYM 7SYJ 7SYI 7NWH 7SYO 7A01 5FLX 6HCJ 6R7Q 7SYH 5K0Y 5LZX 8VVU 6HCQ 9CPA 6HCM 4KZY 4KZZ 4KZX 4UJE 4D5L 4D61 4UJC 3JAJ 4UJD 3JAN 7O7Y 7ZJW 7O80 6SGC 7OYD
Structures from NR_all_21280.43
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