8CGU Summary
- Structure title
- Gentamicin bound to the 30S body
- Authors
- Paternoga, H., Crowe-McAuliffe, C., Novacek, J., Wilson, D.N.
- Release date
- 2023-07-26
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
- Chains
- 2 RNA chains from Escherichia coli BW25113
- 12 other chains
- Nucleic acid compounds
- Other compounds
- 16S rRNA, 23S rRNA
- Small ribosomal subunit protein uS4, Small ribosomal subunit protein uS5, Small ribosomal subunit protein bS6, non-modified isoform, Small ribosomal subunit protein uS8, Small ribosomal subunit protein uS11, Small ribosomal subunit protein uS12, Small ribosomal subunit protein uS15, 30S ribosomal protein S16, Small ribosomal subunit protein uS17, Small ribosomal subunit protein bS18, 30S ribosomal protein S20, Small ribosomal subunit protein bS21
Pairwise Interactions
Interactions annotated by FR3D:- 477 base-pairs
- 1,178 base-stacking
- 33 base-phosphate
- 30 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8CGU contains:- 24 hairpin loops from 0 motif groups
- 51 internal loops from 0 motif groups
- 12 junction loops from 0 motif groups
3D Redundancy
8CGU has chains which belong to the following equivalence classes in the current representative set:- NR_all_56726.143 (1)
- NR_all_83717.157 (1)
- NR_4.0_56726.143 (1)
- NR_4.0_83717.157 (1)
- NR_3.5_56726.143 (1)
- NR_3.5_83717.157 (1)
- NR_3.0_56726.143 (1)
- NR_3.0_83717.157 (1)
- NR_20.0_56726.143 (1)
- NR_20.0_83717.157 (1)
- NR_2.5_56726.143 (1)
- NR_2.5_83717.157 (1)
- NR_2.0_56726.143 (1)
- NR_2.0_83717.157 (1)
Similar structures
5J7L 4YBB 5J8A 5JC9 4WOI 4WOI 5IT8 4V9P 4V9O 5J7L 4V9P 4V9P 4V9P 5J8A 5J91 4V9O 6I7V 5JC9 4V6C 4V52 4V9O 4V7T 4V57 4WWW 6LKQ 4V52 4V57 5J88 4U27 4V7V 4V54 4YBB 4WF1 4U1U 4V64 4U26 4V53 4V9D 6I7V 4U24 4V7S 5IT8 4U25 4V56 4V9D 4V54 4U27 4V64 4V53 4V56 4V7U 4V55 4V50 4V9O 4WWW 4V4Q 4U20 4V55 4U1U 4V50 4U1V 4U25 4V6C 5J88 6BY1 4V4Q 6BY1 5J91 4U26 4V85 4V7T 4WF1 4U24 4U1V 4V6D 4U20 4V89 4V7S 4V6D 4V7V 4V6E 4V5Y 4V9C 4V9C 4V5Y 4V7U 4V6E 4V5B 4V5B 5J5B 4V4H 4V4H 5J5B 4V49 4V4A 4V4G 4V4G 4V4G 4V4G 4V4G 9Q87 8B0X 8FTO 9GHE 8AYE 7K00 8QOA 8G6W 8EMM 8BIM 8BIL 9N2B 8QBT 8BGE 8R6C 9GHA 9GHB 8EIU 8YUO 7N1P 8BF7 7S1H 8AKN 8BHL 8HSP 7Y7G 9N2C 7S1K 8YUP 9FBV 8HTZ 8R8M 7O1A 7Y7E 8YUQ 9GHF 7S1J 9GHD 7S1I 7S1G 7Y7F 8IFB 8YUS 8BHP 8YUR 7N2U 7N2V 7Y7C 7Y7H 7SA4 9H0L 6YSS 9AX8 7Y7D 9GUU 8BH4 9CG5 7UG7 9CG6 9MOR 7NWT 9AX7 6XZB 9GXX 7N30 7N31 6TC3 7ZTA 6TBV 8EKC 9DUK 8HU1 7N2C 8QK7 8P16 8P18 8P17 9MQ4 9CG7 6XZA 7M5D 8BHJ 8G7R 7O1C 9DUL 8ZEJ 8AM9 9GHC 6Y69 8CGJ 9GUT 8BGH 7NSO 7ST2 5AFI 7BOH 9GUP 7OT5 7B5K 7OTC 8G7P 8FZH 8SYL 9G06 8IFC 7P3K 7OIZ 5NWY 8ZTV 8ZTU 6ORE 5WDT 5WFS 7ST6 8G2U 6WD0 7TOS 7O19 6WDE 6H4N 7OIF 7OII 8GHU 5H5U 8FZE 8FZJ 7BOE 8B7Y 6SZS 7NWW 8ZFI 8UXB 9GUV 5MDV 7AC7 7Q4K 8BHN 7NSQ 7PJV 5WE4 7PJY 7NAX 6YSR 5MGP 6ENU 9GFT 8PKL 6ZU1 6ZTO 6ZTP 7NBU 6OM6 9GFT 8G7Q 8FZG 8G7S 8FZI 8FZD 8URY 6X7K 8Q4F 8CAI 6YST 9NL5 7LV0 8T5D 7K53 7SSO 7ST7 7K54 6ENF 7SSN 9GGR 8G31 8G38 8G34 5U9G 6WNW 7ABZ 5U9F 6WDD 7OIG 7ACJ 5UYM 3JCE 9GGR 5MDW 8FZF 5MDZ 9GR1 8UQL 6X6T 8URM 7NAR 6C4I 9NLH 9FDA 8R3V 9GUQ 7OE0 8R3V 8PEG 9NL6 7CPJ 8T5H 7JT1 7K55 7SSD 6WDG 6WD1 6WDF 6OFX 6VWL 8CEP 8EYT 6OG7 9NLJ 9NJV 9NLF 8CGR 9NLE 9GUW 7QGN 9NLB 5WFK 5LZD 7K50 5O2R 7D6Z 7K52 5WE6 6OGI 8A3L 9NLQ 8UR0 9NL7 9NLS 7ACR 8RCL 8RCL 7NSP 7JT2 7K51 5LZE 6WNV 6BU8 5MDY 5U4I 9GUX 6ZTM 6X7F 7OJ0 5IQR 6ZTJ 8RCM 9FIB 8RCM 5WF0 5LZA 5UYL 5KCR 9NKL 6WDM 6WDK 6WD3 6WD5 6WD2 6OSQ 8EYQ 3JBV 5JTE 6VWM 9NJF 5JU8 6VWN 9FCO 6YSU 7JSS 3JCJ 7JSZ 7JT3 5L3P 6ENJ 3J9Z 6WDL 6WD9 6WDJ 6WD4 6WD8 6WD6 9GUS 3JCD 6DNC 6VYS 6XDQ 6OSK 6ORL 8PHJ 8UTJ 6GWT 6GXM 7JSW 7SSL 7SSW 5UYQ 6W6K 8UX8 6WDA 6Q9A 6W77 8UZ3 8UQP 6OUO 8K4E 3J9Y 6GXO 6GXN 5KCS 7SS9 5UYP 6WD7 6OGF 5UYK 6O9J 5KPW 7OE1 8VSA 5KPS 6ZTL 7QG8 6W7N 8UZG 7PJW 6O9K 5UYN 6WDI 7BOG 6WDB 5KPX 6Q97 6OT3 3JBU 7D80 6W7M 6ZTN 8VS9 7BOD 5NP6 6O7K 6OGG 6WDC 8FIZ 7BOF 5KPV 8K3O 6WDH 3JA1 8V03 6GXP 7BOI 8RCS 8RCS 6NQB 7QGH 7NAT 6OST 6Q98 8PVA 8CF1 5LZF 3JCN 8JSG 7PJS 8CGI 7O5H 6XDR 8CA7 5LZC 7NAU 6X9Q 7OI0 8CAZ 8CF8 6XGF 5NO2 5NO4 5NO3 5LZB 8RCT 8RCT 8URI 8UQM 7NAS 7AFO 8JSH 7AF8 7QGR 8URH 7AFI 7AF3 6W7W 7AF5 7AFA 4V5H 7PJZ 7PJT 7PJX 7NAV 8URX 4V69 6XE0 5U4J 6AWB 7AFD 6XII 4V6M 7AFL 4V7B 7AFH 4V7C 4V7D 5MY1 6H58 6H58 7AFN 6AWD 6AWC 4V6K 6VZ5 4V7A 4V65 4V66 7AFK 7PJU 4V6V 6VYZ 3DG2 6VZ2 4V6T 3DG0 4V7I 4V6R 4V6Q 4V48 4V6Y 4V75 4V6Z 4V6N 4V47 3DG4 4V72 4V6S 4V6L 3J28 4V6P 3J2A 5ME1 5ME0 4ADV 3J2B 1ML5 3J29 4V6O 5UZ4 4V73 4V79 3J2C 3DG5 4V4W 4V4V 3J2E 4A2I 4V77 4V70 4V74 4V76 3J2G 3J2F 3J2D 3J2H 2YKR 4V78 4V71Structures from NR_all_56726.143