8I9P Summary
- Structure title
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16
- Authors
- Lau, B., Huang, Z., Beckmann, R., Hurt, E., Cheng, J.
- Release date
- 2023-05-17
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.0 Å
- Chains
- 2 RNA chains from Thermochaetoides thermophila DSM 1495
- 31 other chains
- Nucleic acid compounds
- Other compounds
- RNA (3341-MER), RNA (306-MER)
- Brix domain-containing protein, Ribosome biogenesis protein C8F11.04, Ribosome biogenesis protein ERB1, RNA helicase, Putative RNA-binding protein, Pescadillo homolog, 60S ribosomal protein l7-like protein, Nucleolar protein 16, rRNA-processing protein EBP2, Ribosomal RNA-processing protein 1, Brix domain-containing protein, Protein MAK16, 60S ribosomal protein L4-like protein, 60S ribosomal protein L6, 60S ribosomal protein l7-like protein, 60S ribosomal protein L8, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, Ribosomal protein L15, 60S ribosomal protein L16-like protein, 60S ribosomal protein l17-like protein, Ribosomal protein L18-like protein, 60S ribosomal protein L20, 60S ribosomal protein l21-like protein, 60S ribosomal protein L25-like protein, 60S ribosomal protein L26-like protein, 60S ribosomal protein L32-like protein, 60S ribosomal protein l33-like protein, dolichyl-diphosphooligosaccharide--protein glycotransferase, 60S ribosomal protein L36, Ribosomal protein L37
Pairwise Interactions
Interactions annotated by FR3D:- 571 base-pairs
- 1,533 base-stacking
- 45 base-phosphate
- 59 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8I9P contains:- 37 hairpin loops from 0 motif groups
- 69 internal loops from 0 motif groups
- 17 junction loops from 0 motif groups
3D Redundancy
8I9P has chains which belong to the following equivalence classes in the current representative set:- NR_all_93493.10 (1)
- NR_4.0_93493.10 (1)
- NR_3.5_93493.10 (1)
- NR_3.0_93493.10 (1)
- NR_20.0_93493.10 (1)