8IPX Summary
- Structure title
- human nuclear pre-60S ribosomal particle - State C'
- Authors
- Zhang, Y., Gao, N.
- Release date
- 2023-08-09
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
- Chains
- 4 RNA chains from Homo sapiens
- 54 other chains
- Nucleic acid compounds
- Other compounds
- 28S rRNA, 5S RNA, 5.8S rRNA, ITS2
- 60S ribosomal protein L7-like 1, GTP-binding protein 4, Eukaryotic translation initiation factor 6, Probable ribosome biogenesis protein RLP24, Zinc finger protein 593, 60S ribosomal protein L29, 60S ribosomal protein L3, 60S ribosomal protein L11, 60S ribosomal protein L4, 60S ribosomal protein L30, 60S ribosomal protein L34, 60S ribosomal protein L7a, 60S ribosomal protein L35, 60S ribosomal protein L9, Ribosome biogenesis protein NSA2 homolog, 60S ribosomal protein L36, 60S ribosomal protein L27a, 60S ribosomal protein L37, Ribosomal L1 domain-containing protein 1, 60S ribosomal protein L38, 60S ribosomal protein L39, 60S ribosomal protein L13, 60S ribosomal protein L5, 60S ribosomal protein L14, 60S ribosomal protein L21, 60S ribosomal protein L15, 60S ribosomal protein L13a, Notchless protein homolog 1, 60S ribosomal protein L37a, 60S ribosomal protein L17, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L18a, 60S ribosomal protein L22, 60S ribosomal protein L23, Ribosome biogenesis protein NOP53, 60S ribosomal protein L23a, 60S ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L31, 60S ribosomal protein L32, 60S ribosomal protein L28, 60S ribosomal protein L8, 60S ribosomal protein L35a, 60S ribosomal protein L6, 60S ribosomal protein L7, Pescadillo homolog, Coiled-coil domain-containing protein 86, MKI67 FHA domain-interacting nucleolar phosphoprotein, Guanine nucleotide-binding protein-like 3, mRNA turnover protein 4 homolog, G Protein Nucleolar 2, 60S ribosomal protein L12, Protein LLP homolog
Pairwise Interactions
Interactions annotated by FR3D:- 1,262 base-pairs
- 3,530 base-stacking
- 110 base-phosphate
- 139 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8IPX contains:- 87 hairpin loops from 0 motif groups
- 188 internal loops from 0 motif groups
- 36 junction loops from 0 motif groups
3D Redundancy
8IPX has chains which belong to the following equivalence classes in the current representative set:- NR_all_65061.43 (1)
- NR_all_52752.39 (1)
- NR_20.0_65061.43 (1)
- NR_20.0_52752.39 (1)
Similar structures
8GLP 8QYX 8YOO 8QFD 9C3H 8A3D 8G5Y 8YOP 8QOI 8G5Z 8JDK 8G60 9GUL 6ZMI 8XSX 8JDL 8JDJ 7F5S 8OJ5 8K2C 8UJB 7XNY 8FLE 6ZM7 8JDM 9B0H 7OW7 7XNX 9B0G 6QZP 8IFD 8FLB 8FLD 8FL7 9B0W 8OHD 9B11 9AZS 6Y2L 8G61 8IFE 6Y6X 9B0J 9GMO 6Z6M 6ZME 9B0O 7QVP 8FL2 9B0F 6ZMO 8FLA 8FL6 8UJC 8FL3 8UJD 8Y0X 8UIK 9B0N 8Y0W 9B0P 6LQM 9GY4 9B0R 8IDT 8G6J 6Y0G 9AZN 8INF 8FLF 7QVP 8UKB 8UIZ 6OM0 8XSY 8OJ8 9G8M 8OJ0 6LSR 6OLE 6XA1 6LU8 8FKV 8FL9 8RL2 8UIY 8FKW 8XSZ 9QIW 8IDY 7BHP 8FLC 6Y57 8INE 6LSS 8FKY 8FKX 9B0Q 8IPY 8INK 9B0S 8UJK 8UJJ 8FL4 9B0Q 4UG0 8IPD 8UJ9 8FKQ 8FKU 8FKS 8FKT 6OLI 8FKR 9B0S 8IE3 8ONY 8FKP 8IR1 8IR3 6IP5 5T2C 6W6L 6OLG 8FKZ 6IP8 6OLF 5LKS 6OLZ 8FL0 7ZFW 6OM7 6IP6 4V6X 5A8L 6SXO 9AZC 6Z6N 6Z6L 5AJ0Structures from NR_all_65061.43