- Structure title
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Authors
- Lewis, A.J.O., Hegde, R.S.
- Release date
- 2024-01-24
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
- Chains
-
4 RNA chains from
Oryctolagus cuniculus, Sus scrofa
-
52 other chains
- Nucleic acid compounds
28S rRNA, P-site tRNA, 5S rRNA, 5.8S rRNA
- Other compounds
Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit beta, Protein transport protein Sec61 subunit gamma, Stress-associated endoplasmic reticulum protein, Translocon-associated protein subunit alpha, Translocon-associated protein subunit beta, Translocon-associated protein subunit gamma, Translocon-associated protein subunit delta, Calnexin, Ribosomal protein L8, Nascent chain, Large ribosomal subunit protein uL4, Ribosomal_L18_c domain-containing protein, 60S ribosomal protein L6, Ribosomal Protein uL30, 60S ribosomal protein L7a, 60S ribosomal protein L9, 60S ribosomal protein L10, 60S ribosomal protein L11, 60S ribosomal protein L13, 60S ribosomal protein L14, Ribosomal protein L15, 60S ribosomal protein L13a, uL22, Ribosomal protein L18, Ribosomal protein L19, 60S ribosomal protein L18a, 60S ribosomal protein L21, Large ribosomal subunit protein eL22, Ribosomal protein L23, Ribosomal protein L24, Large ribosomal subunit protein uL23 N-terminal domain-containing protein, Ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L27a, 60S ribosomal protein L29, Large ribosomal subunit protein eL30, 60S ribosomal protein L31, Ribosomal protein L32, 60S ribosomal protein L35a, 60S ribosomal protein L34, 60S ribosomal protein L35, 60S ribosomal protein L36, Ribosomal protein L37, Large ribosomal subunit protein eL38, 60S ribosomal protein L39-like, eL40, 60S ribosomal protein L41, 60S ribosomal protein L36a-like, 60S ribosomal protein L37a, 60S ribosomal protein L28, Ribosomal protein L3
Pairwise Interactions
Interactions annotated by
FR3D:
View all
RNA 3D Motifs
In the current release of the
RNA 3D Motif Atlas, 8RJD contains:
-
85 hairpin loops from 0 motif groups
-
184 internal loops from 0 motif groups
-
49 junction loops from 0 motif groups
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3D Redundancy
8RJD has chains which belong to the following equivalence classes in the current representative set:
Similar structures
None found
