- Structure title
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Authors
- Cruz, V.E., Weirich, C.S., Peddada, N., Erzberger, J.P.
- Release date
- 2024-05-01
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
- Chains
-
3 RNA chains from
Saccharomyces cerevisiae BY4741
-
53 other chains
- Nucleic acid compounds
25S ribosomal RNA, 5.8S ribosomal RNA, ITS2 RNA
- Other compounds
ATP-dependent RNA helicase DBP10, 60S ribosomal subunit assembly/export protein LOC1, Nucleolar complex protein 2, Ribosome biogenesis protein BRX1, 60S ribosomal protein L3, 60S ribosomal protein L4-A, ATP-dependent RNA helicase HAS1, 60S ribosomal protein L6-A, 60S ribosomal protein L7-A, Large ribosomal subunit protein eL8A, Large ribosomal subunit protein uL6A, Nucleolar complex-associated protein 3, rRNA-processing protein EBP2, Proteasome-interacting protein CIC1, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, Large ribosomal subunit protein eL15A, Large ribosomal subunit protein uL13A, 60S ribosomal protein L17-A, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, Large ribosomal subunit protein eL20A, 60S ribosomal protein L22-A, 60S ribosomal protein L23-A, Ribosome assembly factor MRT4, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L27-A, Large ribosomal subunit protein uL1A, Nucleolar GTP-binding protein 1, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L33-A, 60S ribosomal protein L34-A, 60S ribosomal protein L35-A, 60S ribosomal protein L36-A, 60S ribosomal protein L37-A, 60S ribosomal protein L38, 60S ribosome subunit biogenesis protein NIP7, Ribosome biogenesis protein ERB1, Pescadillo homolog, Ribosome biogenesis protein 15, YTM1 isoform 1, 25S rRNA (cytosine(2870)-C(5))-methyltransferase, Ribosome biogenesis protein NSA2, Nuclear GTP-binding protein NUG1, Ribosome biogenesis protein RLP7, Ribosome biogenesis protein RLP24, Nucleolar protein 16, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, Eukaryotic translation initiation factor 6, UPF0642 protein YBL028C
Pairwise Interactions
Interactions annotated by
FR3D:
View all
RNA 3D Motifs
In the current release of the
RNA 3D Motif Atlas, 8V87 contains:
-
62 hairpin loops from 0 motif groups
-
114 internal loops from 0 motif groups
-
33 junction loops from 0 motif groups
More
3D Redundancy
8V87 has chains which belong to the following equivalence classes in the current representative set:
Similar structures
None found
