8YLR Summary
- Structure title
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Authors
- Cheng, J., Wu, C.L., Li, J.X., Zhang, X.Z.
- Release date
- 2024-12-11
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
- Chains
- 6 RNA chains from Saccharomyces cerevisiae S288C
- 76 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA, 25S rRNA, 5S rRNA, 5.8S rRNA, tRNA, tRNA
- Large ribosomal subunit protein uL2A, Large ribosomal subunit protein uL3, Large ribosomal subunit protein uL4A, Large ribosomal subunit protein uL18, Large ribosomal subunit protein eL6B, Large ribosomal subunit protein uL30A, Large ribosomal subunit protein eL8A, Large ribosomal subunit protein uL6A, Large ribosomal subunit protein uL16, Large ribosomal subunit protein uL5B, Large ribosomal subunit protein eL13A, Large ribosomal subunit protein eL14A, Large ribosomal subunit protein eL15A, Large ribosomal subunit protein uL13A, Large ribosomal subunit protein uL22A, Large ribosomal subunit protein eL18A, Small ribosomal subunit protein uS3, Small ribosomal subunit protein uS7, Small ribosomal subunit protein eS10A, Small ribosomal subunit protein eS12, Small ribosomal subunit protein uS19, Small ribosomal subunit protein uS9A, Small ribosomal subunit protein eS17A, Small ribosomal subunit protein uS13A, Small ribosomal subunit protein eS19A, Small ribosomal subunit protein uS10, Small ribosomal subunit protein eS25A, Small ribosomal subunit protein eS28A, Small ribosomal subunit protein uS14A, Small ribosomal subunit protein eS31, Small ribosomal subunit protein RACK1, Small ribosomal subunit protein uS2A, Small ribosomal subunit protein eS1A, Small ribosomal subunit protein uS5, Small ribosomal subunit protein eS4A, Small ribosomal subunit protein eS6A, Small ribosomal subunit protein eS7A, Small ribosomal subunit protein eS8A, Small ribosomal subunit protein uS4A, Small ribosomal subunit protein uS17A, Small ribosomal subunit protein uS15, Small ribosomal subunit protein uS11B, Small ribosomal subunit protein eS21A, Small ribosomal subunit protein uS8A, Small ribosomal subunit protein uS12A, Small ribosomal subunit protein eS24A, Small ribosomal subunit protein eS26A, Small ribosomal subunit protein eS27A, Small ribosomal subunit protein eS30A, Large ribosomal subunit protein eL19A, Large ribosomal subunit protein eL20A, Large ribosomal subunit protein eL21A, Large ribosomal subunit protein eL22A, Large ribosomal subunit protein uL14A, Large ribosomal subunit protein eL24A, Large ribosomal subunit protein uL23, Large ribosomal subunit protein uL24A, Large ribosomal subunit protein eL27A, Large ribosomal subunit protein uL15, Large ribosomal subunit protein eL29, Large ribosomal subunit protein eL30, Large ribosomal subunit protein eL31A, Large ribosomal subunit protein eL32, Large ribosomal subunit protein eL33A, Large ribosomal subunit protein eL34A, Large ribosomal subunit protein uL29A, Large ribosomal subunit protein eL36A, Large ribosomal subunit protein eL37A, Large ribosomal subunit protein eL38, Large ribosomal subunit protein eL39, Large ribosomal subunit protein eL40A, Large ribosomal subunit protein eL41A, Large ribosomal subunit protein eL42A, Large ribosomal subunit protein eL43A, Elongation factor 3A, Elongation factor 2
Pairwise Interactions
Interactions annotated by FR3D:- 1,697 base-pairs
- 4,933 base-stacking
- 81 base-phosphate
- 109 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8YLR contains:- 121 hairpin loops from 0 motif groups
- 238 internal loops from 0 motif groups
- 75 junction loops from 0 motif groups
3D Redundancy
8YLR has chains which belong to the following equivalence classes in the current representative set:- NR_all_81815.2 (2)
- NR_all_03510.69 (1)
- NR_all_90506.80 (1)
- NR_all_18586.75 (1)
- NR_4.0_81815.2 (2)
- NR_4.0_03510.69 (1)
- NR_4.0_90506.80 (1)
- NR_4.0_18586.75 (1)
- NR_20.0_81815.2 (2)
- NR_20.0_03510.69 (1)
- NR_20.0_90506.80 (1)
- NR_20.0_18586.75 (1)
Similar structures
8P9A 8P9A 5TBW 4V88 8PNN 4V88 5TBW 8P4V 8PNN 8P4V 8P85 7OSA 8P85 6HHQ 5OBM 5I4L 5MEI 5NDW 5LYB 5I4L 5OBM 5MEI 7OSM 5ON6 6HHQ 5NDW 5LYB 5ON6 5NDV 5NDV 5FCJ 5NDG 5NDG 5FCJ 5TGM 5TGM 4V7R 4V7R 5DAT 5TGA 5DGE 5DGV 5DGF 5DC3 5DAT 5TGA 5DGV 5DGE 5FCI 5DGF 5DC3 5FCI 8T2Y 8CCS 8EVP 8CDR 8CEH 7ZW0 8T2Z 8EWC 8T2X 8BN3 8EUB 7ZUX 8ZHC 8CGN 7MPJ 8EVQ 6LQP 6T4Q 8CIV 8ZHB 8EWB 8T30 6WOO 4U4R 8T3A 8CG8 8ZH3 9F9S 6TB3 6SNT 9F9S 6KE6 4U3U 8T3D 8ZGR 4U4R 8K82 7A1G 6ZVI 7N8B 7MPI 8CF5 8CDL 8CAH 8T3E 4U3U 8ZGY 8T3B 4U3M 8T3F 4U4Q 4U4U 4U52 8Z70 4U3M 8UT0 7RR5 4U6F 8C01 4U4N 4U52 4U4U 4U4Q 6Q8Y 4U6F 4U4Z 7B7D 8CAS 4U4Y 4U3N 6XIR 6SV4 6SV4 8K2D 4U55 6T7T 4U4Z 5M1J 4U4N 8EVT 4U50 6T7I 4U51 8XU8 4U3N 8CKU 7ZPQ 8UTI 4U4Y 4U51 6S47 4U55 6TNU 6LQU 9G33 6FAI 5JUP 6Z6K 6Z6J 4U53 4U50 6RBD 8Y0U 8Z71 6ZQC 4U53 6SV4 8C00 4U56 8BQX 8EVS 6ZQB 4U56 8T3C 6LQQ 7NRC 8BQD 8YLD 7SUK 5MC6 6T83 6T83 5JUO 5JUT 8EVR 6RBE 5JUU 6EML 5WLC 8CMJ 6GQB 6Y7C 7D4I 6LQS 5JUS 8C83 6GQV 6ZQD 6XIQ 7AJU 7ZUW 7NRD 4U4O 7WTR 4U4O 4V8Y 6ZQG 6GQ1 7WTN 7AJT 7WTL 7WTO 7ZRS 7WTP 7WTQ 5WYK 5LL6 7WTM 7D5S 6I7O 6LQT 6I7O 6ZCE 6LQV 3J6Y 3J6X 3J77 3J78 6ZU9 6ZQF 4V8Z 7D5T 6ZQE 5TZS 6LQR 5WYJ 4V6I 7D63Structures from NR_all_03510.69