8ZDC Summary
- Structure title
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3
- Authors
- Huang, Z., Wang, M., Li, Y., Beckmann, R., Cheng, J.
- Release date
- 2025-02-12
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
- Chains
- 1 RNA chain from Homo sapiens
- 37 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA
- Small ribosomal subunit protein uS2, Small ribosomal subunit protein eS1, Small ribosomal subunit protein uS5, Small ribosomal subunit protein uS3, Small ribosomal subunit protein eS4, X isoform, Small ribosomal subunit protein uS7, Small ribosomal subunit protein eS6, Small ribosomal subunit protein eS7, Small ribosomal subunit protein eS8, Small ribosomal subunit protein uS4, Small ribosomal subunit protein eS10, Small ribosomal subunit protein uS17, Small ribosomal subunit protein eS12, Small ribosomal subunit protein uS15, Small ribosomal subunit protein uS11, Small ribosomal subunit protein uS19, Small ribosomal subunit protein uS9, Small ribosomal subunit protein eS17, Small ribosomal subunit protein uS13, Small ribosomal subunit protein eS19, Small ribosomal subunit protein uS10, Small ribosomal subunit protein eS21, Small ribosomal subunit protein uS8, Small ribosomal subunit protein uS12, Small ribosomal subunit protein eS24, Small ribosomal subunit protein eS25, Small ribosomal subunit protein eS27, Small ribosomal subunit protein eS28, Small ribosomal subunit protein uS14, Small ribosomal subunit protein RACK1, Ubiquitin, Ubiquitin, Serine/threonine-protein kinase RIO3, Protein LTV1 homolog, Pre-rRNA-processing protein TSR1 homolog, RNA-binding protein PNO1, RNA-binding protein NOB1
Pairwise Interactions
Interactions annotated by FR3D:- 583 base-pairs
- 1,618 base-stacking
- 28 base-phosphate
- 42 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8ZDC contains:- 30 hairpin loops from 0 motif groups
- 89 internal loops from 0 motif groups
- 17 junction loops from 0 motif groups
3D Redundancy
8ZDC has chains which belong to the following equivalence classes in the current representative set:- NR_all_46995.52 (1)
- NR_4.0_46995.52 (1)
- NR_20.0_46995.52 (1)
Similar structures
8GLP 8QOI 8YOO 9C3H 8G5Y 6ZLW 8T4S 8YOP 6ZXG 8G60 8G5Z 6ZMI 9BKD 8K2C 6ZP4 8PPL 6ZXH 7XNY 7XNX 6ZM7 8XSX 8XXL 6ZVH 7MQA 8PJ5 7K5I 9ED0 6ZOJ 6ZME 6ZMO 8PJ6 6ZV6 6Y2L 7WTX 7WTZ 7QVP 8G61 9AZS 8XXM 6ZMT 6ZON 6Z6M 7R4X 7WTU 9B0W 6ZN5 7WTT 9B0O 6ZXE 6ZXD 8PJ4 8Y0X 8XP2 8OZ0 8JDJ 6Y0G 8G6J 7A09 7WTW 6ZOK 9B0N 9B11 7QVP 6ZUO 9B0H 9B0J 9G8O 6OM0 6OLE 8UIZ 6YBW 7WU0 8JDL 8XXN 9B0F 8XSY 8XP3 8XSZ 8UJB 8UIY 8JDK 8PJ2 9AZM 6ZXF 8Y0W 9B0R 9AZN 8JDM 6ZOL 8PJ1 9B0P 6XA1 6Y57 8UKB 7TQL 9B0Q 7QP7 8IFE 9BLN 7WTS 8UJJ 8UJK 9B0Q 6ZVJ 8PJ3 9B0S 4UG0 9B0G 8IFD 6G5I 9G8M 7WTV 6G5H 6G18 6IP5 5A2Q 9B0S 8UJ9 6OLI 7MQ8 6IP8 6G51 5LKS 6G4S 8UIK 6OLG 7MQ9 7QP6 5OA3 6OLF 8RG0 6OLZ 6G53 6G4W 6OM7 6IP6 5VYC 5VYC 5VYC 5VYC 5VYC 6FEC 5VYC 4V6X 5A8L 9AZC 9AZN 5T2C 6Z6L 6Z6N 6ZMW 5AJ0 8PPK 6QZP 8ZDB 8ZDDStructures from NR_all_46995.52