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9F1B Summary

View in PDB or NAKB
Circular interaction diagram PDF
Structure title
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Authors
Yudin, D., Scaiola, A., Ban, N.
Release date
2024-08-21
Experimental technique
ELECTRON MICROSCOPY
Resolution
3.0 Å
Chains
6 RNA chains from Oryctolagus cuniculus
83 other chains
Nucleic acid compounds
18S rRNA, mRNA, P-site tRNA, 28S rRNA, 5S rRNA, 5.8S rRNA
Other compounds
40S ribosomal protein S27, 40S ribosomal protein S28, Ribosomal protein S27a, 40S ribosomal protein S30, Small ribosomal subunit protein eS26, Small ribosomal subunit protein RACK1, 40S ribosomal protein S29, 40S ribosomal protein SA, 40S ribosomal protein S3a, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S4, Ribosomal protein S5, 40S ribosomal protein S6, 40S ribosomal protein S7, 40S ribosomal protein S8, 40S ribosomal protein S9, S10_plectin domain-containing protein, 40S ribosomal protein S11, 40S ribosomal protein S12, 40S ribosomal protein S13, Small ribosomal subunit protein uS11, 40S ribosomal protein uS19, Small ribosomal subunit protein uS9, 40S ribosomal protein eS17, 40S ribosomal protein S18, 40S ribosomal protein S19, Small ribosomal subunit protein uS10, Small ribosomal subunit protein eS21, Ribosomal protein S15a, 40S ribosomal protein S23, 40S ribosomal protein S24, 40S ribosomal protein S25, 60S ribosomal protein L41, Large ribosomal subunit protein uL18, Large ribosomal subunit protein uL2, Ribosomal protein L3, 60S ribosomal protein L4, 60S ribosomal protein L6, Ribosomal Protein uL30, 60S ribosomal protein L7a, 60S ribosomal protein L9, 60S ribosomal protein L10, 60S ribosomal protein L11, Nascent chain, Large ribosomal subunit protein eL13, 60S ribosomal protein L14, Ribosomal protein L15, Large ribosomal subunit protein uL13, Large ribosomal subunit protein uL22, Large ribosomal subunit protein eL18, Ribosomal protein L19, Large ribosomal subunit protein eL20, 60S ribosomal protein L21, 60S ribosomal protein L22, Ribosomal protein L23, Ribosomal protein L24, Large ribosomal subunit protein uL23, Ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L27a, 60S ribosomal protein L29, 60S ribosomal protein L30, 60S ribosomal protein L31, Ribosomal protein L32, 60S ribosomal protein L35a, Large ribosomal subunit protein eL34, 60S ribosomal protein L35, 60S ribosomal protein L36, Ribosomal protein L37, 60S ribosomal protein L38, 60S ribosomal protein L39-like, Ubiquitin-ribosomal protein eL40 fusion protein, Large ribosomal subunit protein eL42, 60S ribosomal protein L37a, 60S ribosomal protein L28, Large ribosomal subunit protein uL10, 60S ribosomal protein L12, Nascent polypeptide-associated complex subunit alpha, Transcription factor BTF3, Glutathione S-transferase class-mu 26 kDa isozyme,N-alpha-acetyltransferase 50, N-alpha-acetyltransferase 15, NatA auxiliary subunit, N-alpha-acetyltransferase 10

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 9F1B contains:
  • 130 hairpin loops from 0 motif groups
  • 365 internal loops from 0 motif groups
  • 76 junction loops from 0 motif groups
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3D Redundancy

9F1B has chains which belong to the following equivalence classes in the current representative set:

Similar structures

7O7Z 8SCB 7JQB 7UCK 8VVQ 9QQA 9H6Y 9BDL 8P03 7NWI 8P2K 9H74 8VVP 6W2T 9BDN 6P4H 7ZJX 6P4G 8P09 7TOR 7O81 7SYS 6W2S 9NDP 6MTC 6MTD 7UCJ 9MR4 6P5I 9F1D 6P5N 7SYW 5LZV 6MTE 9QQB 7JQC 8BHF 6YAL 6MTB 6P5K 7SYQ 5LZZ 6D90 5LZS 6YAN 6ZVK 8VVR 7NWG 6HCF 7SYR 9F1C 8VVS 7SYX 5LZW 5LZT 7SYN 6R5Q 7MDZ 7SYV 6D9J 9BDP 3JAH 8VVT 6R6P 8VFT 6GZ5 6GZ4 7SYK 5LZU 7SYP 3JAG 6P5J 7SYU 7SYG 6GZ3 5LZY 7TOQ 6YAM 3JAI 7SYL 9C8K 8VVV 7SYT 6R6G 7SYM 7SYJ 7SYI 7NWH 7SYO 7A01 5FLX 6HCJ 6R7Q 7SYH 5K0Y 5LZX 8VVU 6HCQ 9CPA 6HCM 4KZY 4KZZ 4KZX 4UJE 4D5L 4D61 4UJC 3JAJ 4UJD 3JAN 7O7Y 7ZJW 7O80 6SGC 8BTK 7OYD
Structures from NR_all_21280.43
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