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9F9S Summary

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Circular interaction diagram PDF
Structure title
Yeast SDD1 Disome with Mbf1
Authors
Denk, T., Beckmann, R.
Release date
2024-12-04
Experimental technique
ELECTRON MICROSCOPY
Resolution
2.9 Å
Chains
12 RNA chains from Saccharomyces cerevisiae
152 other chains
Nucleic acid compounds
mRNA, tRNA P-site, stalled, tRNA, tRNA, Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), Saccharomyces cerevisiae S288C 5.8S ribosomal RNA, Saccharomyces cerevisiae S288C 5S ribosomal RNA, Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications, Saccharomyces cerevisiae S288C 5.8S ribosomal RNA, Saccharomyces cerevisiae S288C 5S ribosomal RNA, Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Other compounds
Uncharacterized protein YEL057C, Multiprotein-bridging factor 1, 60S ribosomal protein L6-B, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, 60S ribosomal protein L10, 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, 60S ribosomal protein L20-A, 60S ribosomal protein L21-A, 60S ribosomal protein L23-A, 60S ribosomal protein L43-A, 60S ribosomal protein L42-A, 60S ribosomal protein L41-A, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L39, 60S ribosomal protein L38, 60S ribosomal protein L37-A, 60S ribosomal protein L36-A, 60S ribosomal protein L35-A, 60S ribosomal protein L34-A, 60S ribosomal protein L33-A, 60S ribosomal protein L32, 60S ribosomal protein L31-A, 60S ribosomal protein L30, 60S ribosomal protein L29, 60S ribosomal protein L28, 60S ribosomal protein L27-A, 60S ribosomal protein L26-A, 60S ribosomal protein L25, 60S ribosomal protein L24-A, 60S ribosomal protein L22-A, 60S ribosomal protein L2-A, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L5, 60S ribosomal protein L6-A, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, 60S ribosomal protein L10, 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, 60S ribosomal protein L20-A, 60S ribosomal protein L21-A, 60S ribosomal protein L12-A, 60S acidic ribosomal protein P0, 60S ribosomal protein L23-A, 60S ribosomal protein L43-A, 60S ribosomal protein L42-A, 60S ribosomal protein L41-A, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L39, 60S ribosomal protein L38, 60S ribosomal protein L37-A, 60S ribosomal protein L36-A, 60S ribosomal protein L35-A, 60S ribosomal protein L34-A, 60S ribosomal protein L33-A, 60S ribosomal protein L32, 60S ribosomal protein L31-A, 60S ribosomal protein L30, 60S ribosomal protein L29, 60S ribosomal protein L28, 60S ribosomal protein L27-A, 60S ribosomal protein L26-A, 60S ribosomal protein L25, 60S ribosomal protein L24-A, 60S ribosomal protein L22-A, 60S ribosomal protein L2-A, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L5, Small ribosomal subunit protein eS26A, 40S ribosomal protein S27-A, 40S ribosomal protein S28-A, Small ribosomal subunit protein uS14A, 40S ribosomal protein S30-A, Ubiquitin, Guanine nucleotide-binding protein subunit beta-like protein, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, 40S ribosomal protein S2, Small ribosomal subunit protein uS3, 40S ribosomal protein S4-A, 40S ribosomal protein S5, 40S ribosomal protein S6-A, 40S ribosomal protein S7-A, 40S ribosomal protein S8-A, 40S ribosomal protein S9-A, 40S ribosomal protein S10-A, 40S ribosomal protein S11-A, 40S ribosomal protein S12, 40S ribosomal protein S13, 40S ribosomal protein S14-B, 40S ribosomal protein S15, 40S ribosomal protein S16-A, 40S ribosomal protein S17-A, 40S ribosomal protein S18-A, 40S ribosomal protein S19-A, Small ribosomal subunit protein uS10, Small ribosomal subunit protein eS21A, 40S ribosomal protein S22-A, 40S ribosomal protein S23-A, 40S ribosomal protein S24-A, 40S ribosomal protein S25-A, Small ribosomal subunit protein eS26A, 40S ribosomal protein S27-A, Small ribosomal subunit protein eS28B, Small ribosomal subunit protein uS14A, 40S ribosomal protein S30-A, Ubiquitin, Guanine nucleotide-binding protein subunit beta-like protein, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, 40S ribosomal protein S2, Small ribosomal subunit protein uS3, 40S ribosomal protein S4-A, 40S ribosomal protein S5, 40S ribosomal protein S6-A, 40S ribosomal protein S7-A, 40S ribosomal protein S8-A, 40S ribosomal protein S9-A, 40S ribosomal protein S10-A, 40S ribosomal protein S11-A, 40S ribosomal protein S12, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S15, 40S ribosomal protein S16-A, 40S ribosomal protein S17-B, 40S ribosomal protein S18-A, 40S ribosomal protein S19-A, Small ribosomal subunit protein uS10, Small ribosomal subunit protein eS21A, 40S ribosomal protein S22-A, 40S ribosomal protein S23-A, 40S ribosomal protein S24-A, 40S ribosomal protein S25-A

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 9F9S contains:
  • 236 hairpin loops from 0 motif groups
  • 477 internal loops from 0 motif groups
  • 142 junction loops from 0 motif groups
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3D Redundancy

9F9S has chains which belong to the following equivalence classes in the current representative set:

Similar structures

None found
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