9G8M Summary
- Structure title
- human 80S ribosome bound by a SKI2-exosome complex
- Authors
- Koegel, A., Keidel, A., Loukeri, M.J., Kuhn, C.C., Langer, L.M., Schaefer, I.B., Conti, E.
- Release date
- 2024-10-23
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
- Chains
- 5 RNA chains from Homo sapiens, Cricket paralysis virus
- 87 other chains
- Nucleic acid compounds
- Other compounds
- 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA, CrPV-IRES RNA
- Helicase SKI2W, Isoform 2 of HBS1-like protein, Exosome complex component RRP42, Exosome complex component MTR3, Exosome complex component RRP40,Exosome complex component MTR3, Exosome complex component RRP4, Exosome complex component CSL4, Exosome complex component RRP45, Exosome complex component RRP41, 60S ribosomal protein L8, 60S ribosomal protein L3, 60S ribosomal protein L4, 60S ribosomal protein L5, Large ribosomal subunit protein eL6, Large ribosomal subunit protein uL30, 60S ribosomal protein L7a, 60S ribosomal protein L9, Ribosomal protein uL16-like, 60S ribosomal protein L11, 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15, 60S ribosomal protein L13a, 60S ribosomal protein L17, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L18a, 60S ribosomal protein L21, 60S ribosomal protein L22, 60S ribosomal protein L23, 60S ribosomal protein L24, 60S ribosomal protein L23a, 60S ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L27a, 60S ribosomal protein L29, 60S ribosomal protein L30, 60S ribosomal protein L31, 60S ribosomal protein L32, 60S ribosomal protein L35a, 60S ribosomal protein L34, 60S ribosomal protein L35, 60S ribosomal protein L36, 60S ribosomal protein L37, 60S ribosomal protein L38, 60S ribosomal protein L39, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L41, 60S ribosomal protein L36a, 60S ribosomal protein L37a, 60S ribosomal protein L28, DIS3-like exonuclease 1, Exosome complex component RRP43, Exosome complex component RRP46, 40S ribosomal protein SA, 40S ribosomal protein S3a, 40S ribosomal protein S2, 40S ribosomal protein S3, 40S ribosomal protein S4, X isoform, 40S ribosomal protein S5, 40S ribosomal protein S6, 40S ribosomal protein S7, 40S ribosomal protein S8, 40S ribosomal protein S9, 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, 40S ribosomal protein S13, 40S ribosomal protein S14, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S17, 40S ribosomal protein S18, 40S ribosomal protein S19, 40S ribosomal protein S20, 40S ribosomal protein S21, 40S ribosomal protein S15a, 40S ribosomal protein S23, 40S ribosomal protein S24, 40S ribosomal protein S25, 40S ribosomal protein S26, 40S ribosomal protein S27, 40S ribosomal protein S28, 40S ribosomal protein S29, 40S ribosomal protein S30, Ubiquitin, Receptor of activated protein C kinase 1
Pairwise Interactions
Interactions annotated by FR3D:- 1,684 base-pairs
- 5,192 base-stacking
- 210 base-phosphate
- 245 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 9G8M contains:- 115 hairpin loops from 0 motif groups
- 251 internal loops from 0 motif groups
- 63 junction loops from 0 motif groups
3D Redundancy
9G8M has chains which belong to the following equivalence classes in the current representative set:- NR_all_65061.43 (1)
- NR_all_52752.39 (1)
- NR_all_46995.52 (1)
- NR_all_68086.2 (1)
- NR_4.0_65061.43 (1)
- NR_4.0_52752.39 (1)
- NR_4.0_46995.52 (1)
- NR_4.0_68086.2 (1)
- NR_3.5_65061.43 (1)
- NR_3.5_52752.39 (1)
- NR_3.5_46995.52 (1)
- NR_3.5_68086.2 (1)
- NR_20.0_65061.43 (1)
- NR_20.0_52752.39 (1)
- NR_20.0_46995.52 (1)
- NR_20.0_68086.2 (1)
Similar structures
8GLP 8QYX 8YOO 8QFD 9C3H 8A3D 8G5Y 8YOP 8QOI 8G5Z 8JDK 8G60 9GUL 6ZMI 8XSX 8JDL 8JDJ 7F5S 8OJ5 8K2C 8UJB 7XNY 8FLE 6ZM7 8JDM 9B0H 7OW7 7XNX 9B0G 6QZP 8IFD 8FLB 8FLD 8FL7 9B0W 8OHD 9B11 9AZS 6Y2L 8G61 8IFE 6Y6X 9B0J 9GMO 6Z6M 6ZME 9B0O 7QVP 8FL2 9B0F 6ZMO 8FLA 8FL6 8UJC 8FL3 8UJD 8Y0X 8UIK 9B0N 8Y0W 9B0P 6LQM 9GY4 9B0R 8IDT 8G6J 6Y0G 9AZN 8INF 8FLF 7QVP 8UKB 8UIZ 6OM0 8XSY 8OJ8 8OJ0 6LSR 6OLE 6XA1 6LU8 8FKV 8FL9 8RL2 8UIY 8FKW 8XSZ 9QIW 8IDY 7BHP 8FLC 6Y57 8INE 6LSS 8FKY 8FKX 9B0Q 8IPY 8INK 9B0S 8UJK 8UJJ 8FL4 9B0Q 4UG0 8IPD 8UJ9 8FKQ 8FKU 8FKS 8FKT 6OLI 8FKR 9B0S 8IE3 8ONY 8FKP 8IR1 8IR3 6IP5 5T2C 6W6L 6OLG 8FKZ 6IP8 6OLF 5LKS 6OLZ 8FL0 7ZFW 6OM7 6IP6 4V6X 8IPX 5A8L 6SXO 9AZC 6Z6N 6Z6L 5AJ0Structures from NR_all_65061.43