RNA 3D Hub //

9H6Y Summary

View in PDB or NAKB
Circular interaction diagram PDF
Structure title
Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA
Authors
Nguyen, T.T., Hashem, Y., Rocha, R.E.O., Boissier, F., Qian, S.B., Jia, L., Uematsu, S., Gu, Y., Shi, S.
Release date
2025-12-10
Experimental technique
ELECTRON MICROSCOPY
Resolution
2.9 Å
Chains
3 RNA chains from Oryctolagus cuniculus
39 other chains
Nucleic acid compounds
Initiator methionylated tRNA, 18S ribosomal RNA, Linear mRNA
Other compounds
Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 3, Small ribosomal subunit protein uS2, Small ribosomal subunit protein eS1, Small ribosomal subunit protein uS5, Small ribosomal subunit protein uS3, Small ribosomal subunit protein eS4, Small ribosomal subunit protein uS7, Small ribosomal subunit protein eS6, Small ribosomal subunit protein eS7, Small ribosomal subunit protein eS8, Small ribosomal subunit protein uS4, Small ribosomal subunit protein eS10, Small ribosomal subunit protein uS17, Small ribosomal subunit protein eS12, Small ribosomal subunit protein uS15, Small ribosomal subunit protein uS11, Small ribosomal subunit protein uS19, Small ribosomal subunit protein uS9, Small ribosomal subunit protein eS17, Small ribosomal subunit protein uS13, Small ribosomal subunit protein eS19, Small ribosomal subunit protein uS10, Small ribosomal subunit protein eS21, Small ribosomal subunit protein uS8, Small ribosomal subunit protein uS12, 40S ribosomal protein S24, Small ribosomal subunit protein eS26, Small ribosomal subunit protein eS27, Small ribosomal subunit protein eS28, Small ribosomal subunit protein uS14, Ubiquitin-ribosomal protein eS31 fusion protein, Small ribosomal subunit protein RACK1, Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein, Eukaryotic translation initiation factor 4C, ATP binding cassette subfamily E member 1, Small ribosomal subunit protein eS32, Small ribosomal subunit protein eS25, Eukaryotic translation initiation factor 5

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 9H6Y contains:
  • 36 hairpin loops from 0 motif groups
  • 101 internal loops from 0 motif groups
  • 23 junction loops from 0 motif groups
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3D Redundancy

9H6Y has chains which belong to the following equivalence classes in the current representative set:

Similar structures

9H74 6YAN 6YAL 6YAM 9CPA
Structures from NR_all_19534.5
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