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9I78 Summary

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Circular interaction diagram PDF
Structure title
Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
Authors
Yang, T.J., McDowell, M.A.
Release date
2025-11-12
Experimental technique
ELECTRON MICROSCOPY
Resolution
2.2 Å
Chains
3 RNA chains from Thermochaetoides thermophila DSM 1495
47 other chains
Nucleic acid compounds
26S rRNA, 5.8S rRNA, 5S rRNA
Other compounds
Translocon Sec61/SecY plug domain-containing protein, SEC61 beta subunit, SEC61 gamma subunit, CCDC47, Putative inorganic phosphate transporter protein, Translocon-associated protein subunit alpha, 60S ribosomal protein L2-like protein, 60S ribosomal protein L3-like protein, 60S ribosomal protein L4-like protein, 60S ribosomal protein l5-like protein, 60S ribosomal protein L6, 60S ribosomal protein l7-like protein, 60S ribosomal protein L8, 60S ribosomal protein l9-like protein, 60S ribosomal protein L10-like protein, Putative ribosomal protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, Ribosomal protein L15, 60S ribosomal protein L16-like protein, 60S ribosomal protein l17-like protein, Ribosomal protein L18-like protein, Ribosomal protein L19, 60S ribosomal protein L20, 60S ribosomal protein l21-like protein, 60S ribosomal protein L22-like protein, 60S ribosomal protein l23-like protein, 60S ribosomal protein L25-like protein, 60S ribosomal protein L26-like protein, 60S ribosomal protein L27, 60S ribosomal protein L28-like protein, 60S ribosomal protein L29, 60S ribosomal protein l30-like protein, Putative 60S ribosomal protein, 60S ribosomal protein L32-like protein, 60S ribosomal protein l33-like protein, Ribosomal protein l34-like protein, Dolichyl-diphosphooligosaccharide--protein glycotransferase, 60S ribosomal protein L36, Ribosomal protein L37, 60S ribosomal protein L38-like protein, Ribosomal protein eL39, Putative ribosomal protein, 60S ribosomal protein L41-A, 60S ribosomal protein L44-like protein, 60S ribosomal protein L43-like protein, Putative 60S ribosomal protein

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 9I78 contains:
  • 76 hairpin loops from 0 motif groups
  • 145 internal loops from 0 motif groups
  • 46 junction loops from 0 motif groups
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3D Redundancy

9I78 has chains which belong to the following equivalence classes in the current representative set:

Similar structures

8PV7 8PVL 8PV1 8PVK 8PV2 8PV8 8PV4 8PV6 8PV3 8OO0 7Z3N 7Z3O 8ONZ 8PV5 7OLC 7OLD 8IA0 8I9Z 8I9X 8I9Y 8I9W 8I9V 8I9R 8I9T 8I9P
Structures from NR_all_93493.9
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