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9PJ8 Summary

View in PDB or NAKB
Circular interaction diagram
Structure title
C. acnes 70S ribosome bound to Sarecycline
Authors
Devarkar, S.C., Lomakin, I.B., Bunick, C.G.
Release date
2026-05-13
Experimental technique
ELECTRON MICROSCOPY
Resolution
2.5 Å
Chains
5 RNA chains from Cutibacterium acnes, Escherichia coli, Thermus thermophilus
49 other chains
Nucleic acid compounds
16S rRNA, initiator tRNA Met (76-MER), mRNA 32MF, 23S rRNA, 5S rRNA
Other compounds
50S ribosomal protein L33, 50S ribosomal protein L34, Large ribosomal subunit protein bL35, 50S ribosomal protein L36, 50S ribosomal protein L31, 30S ribosomal protein S2, 30S ribosomal protein S4, Small ribosomal subunit protein uS5, 30S ribosomal protein S6, 30S ribosomal protein S3, 30S ribosomal protein S8, 30S ribosomal protein S7, 30S ribosomal protein S9, 30S ribosomal protein S11, 30S ribosomal protein S12, Small ribosomal subunit protein uS10, 30S ribosomal protein S13, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S14 type Z, 30S ribosomal protein S20, 30S ribosomal protein S19, 50S ribosomal protein bL37, AURKAIP1/COX24 domain-containing protein, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, Large ribosomal subunit protein bL17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, Large ribosomal subunit protein bL21, 50S ribosomal protein L22, 50S ribosomal protein L23, Large ribosomal subunit protein uL24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L32

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 9PJ8 contains:
  • 105 hairpin loops from 0 motif groups
  • 185 internal loops from 0 motif groups
  • 65 junction loops from 0 motif groups
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3D Redundancy

9PJ8 has chains which belong to the following equivalence classes in the current representative set:

Similar structures

9PJ7 9PJ9 8CRX 8CWO 8CVO
Structures from NR_all_86966.1
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