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9R9O Summary

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Circular interaction diagram PDF
Structure title
Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
Authors
Grundmann, L., Zhang, Y., Grishkovskaya, I., Rospert, S., Haselbach, D.
Release date
2025-12-24
Experimental technique
ELECTRON MICROSCOPY
Resolution
2.9 Å
Chains
6 RNA chains from Saccharomyces cerevisiae
73 other chains
Nucleic acid compounds
mRNA_Flag-Pgk-1-70, tRNA Methionin elongator, 25S ribosomal RNA, 18S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA
Other compounds
Ribosome-associated molecular chaperone SSB1, Phosphoglycerate kinase, 60S ribosomal protein L2-A, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L5, 60S ribosomal protein L6-B, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, 60S ribosomal protein L10, 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, 60S ribosomal protein L20-A, 60S ribosomal protein L21-A, 60S ribosomal protein L22-A, 60S ribosomal protein L23-A, Large ribosomal subunit protein eL24B, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L27-A, 60S ribosomal protein L28, 60S ribosomal protein L29, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L33-A, 60S ribosomal protein L34-A, 60S ribosomal protein L35-A, 60S ribosomal protein L36-A, 60S ribosomal protein L37-A, 60S ribosomal protein L38, 60S ribosomal protein L39, Large ribosomal subunit protein eL41B, 60S ribosomal protein L42-A, 60S ribosomal protein L43-A, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, 40S ribosomal protein S2, Small ribosomal subunit protein uS3, 40S ribosomal protein S4-A, 40S ribosomal protein S5, 40S ribosomal protein S6-A, 40S ribosomal protein S7-A, 40S ribosomal protein S8-A, 40S ribosomal protein S9-A, 40S ribosomal protein S10-A, 40S ribosomal protein S11-A, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S15, 40S ribosomal protein S16-A, 40S ribosomal protein S17-B, 40S ribosomal protein S18-A, 40S ribosomal protein S19-A, Small ribosomal subunit protein uS10, 40S ribosomal protein S21-A, 40S ribosomal protein S22-A, 40S ribosomal protein S23-A, 40S ribosomal protein S24-A, 40S ribosomal protein S25-A, Small ribosomal subunit protein eS26A, 40S ribosomal protein S27-A, Small ribosomal subunit protein eS28B, Small ribosomal subunit protein uS14A, 40S ribosomal protein S30-A, Guanine nucleotide-binding protein subunit beta-like protein

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 9R9O contains:
  • 102 hairpin loops from 0 motif groups
  • 224 internal loops from 0 motif groups
  • 63 junction loops from 0 motif groups
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3D Redundancy

9R9O has chains which belong to the following equivalence classes in the current representative set:

Similar structures

9R9P
Structures from NR_all_41176.1
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