9WW5 Summary
- Structure title
- human 80S ribosome rotated state
- Authors
- Fujino, M., Tanaka, Y., Iwasaki, W., Ito, T., Yokoyama, T.
- Release date
- 2026-09-16
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
- Chains
- 4 RNA chains from Homo sapiens
- 75 other chains
- Nucleic acid compounds
- Other compounds
- 28S rRNA (3773-MER), 5S rRNA (120-MER), 5.8S rRNA (156-MER), 18S rRNA (1740-MER)
- 60S ribosomal protein L8, Large ribosomal subunit protein uL3, Large ribosomal subunit protein uL4, Large ribosomal subunit protein uL18, Large ribosomal subunit protein eL6, 60S ribosomal protein L7, 60S ribosomal protein L7a, 60S ribosomal protein L9, Ribosomal protein uL16-like, 60S ribosomal protein L11, 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15, 60S ribosomal protein L13a, 60S ribosomal protein L17, 60S ribosomal protein L18, 60S ribosomal protein L19, 60S ribosomal protein L18a, 60S ribosomal protein L21, 60S ribosomal protein L22, 60S ribosomal protein L23, 60S ribosomal protein L24, 60S ribosomal protein L23a, 60S ribosomal protein L26, 60S ribosomal protein L27, Large ribosomal subunit protein uL15, 60S ribosomal protein L29, 60S ribosomal protein L30, 60S ribosomal protein L31, 60S ribosomal protein L32, 60S ribosomal protein L35a, 60S ribosomal protein L34, 60S ribosomal protein L35, 60S ribosomal protein L36, 60S ribosomal protein L37, 60S ribosomal protein L38, 60S ribosomal protein L39, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L41, 60S ribosomal protein L36a, 60S ribosomal protein L37a, 60S ribosomal protein L28, 40S ribosomal protein S4, X isoform, Small ribosomal subunit protein uS2, 40S ribosomal protein S3a, 40S ribosomal protein S3, 40S ribosomal protein S5, 40S ribosomal protein S7, 40S ribosomal protein S8, 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S15, 40S ribosomal protein S16, 40S ribosomal protein S18, Small ribosomal subunit protein eS19, 40S ribosomal protein S20, 40S ribosomal protein S21, 40S ribosomal protein S23, 40S ribosomal protein S26, 40S ribosomal protein S28, 40S ribosomal protein S29, Receptor of activated protein C kinase 1, 40S ribosomal protein S2, 40S ribosomal protein S6, 40S ribosomal protein S9, 40S ribosomal protein S12, 40S ribosomal protein S13, Small ribosomal subunit protein uS11, 40S ribosomal protein S15a, 40S ribosomal protein S24, 40S ribosomal protein S25, 40S ribosomal protein S27, Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein, Ubiquitin-40S ribosomal protein S27a, 40S ribosomal protein S17
Pairwise Interactions
Interactions annotated by FR3D:- 1,948 base-pairs
- 5,362 base-stacking
- 504 base-phosphate
- 589 base-ribose
- 245 oxygen stacking
- 366 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 9WW5 contains:- 111 hairpin loops from 0 motif groups
- 264 internal loops from 0 motif groups
- 65 junction loops from 0 motif groups
3D Redundancy
9WW5 has chains which belong to the following equivalence classes in the current representative set:- NR_all_65061.64 (1)
- NR_all_52752.60 (1)
- NR_all_46995.73 (1)
- NR_4.0_65061.64 (1)
- NR_4.0_52752.60 (1)
- NR_4.0_46995.73 (1)
- NR_3.5_65061.64 (1)
- NR_3.5_52752.60 (1)
- NR_3.5_46995.73 (1)
- NR_3.0_65061.64 (1)
- NR_3.0_52752.60 (1)
- NR_3.0_46995.73 (1)
- NR_20.0_65061.64 (1)
- NR_20.0_52752.60 (1)
- NR_20.0_46995.73 (1)
Similar structures
8GLP 9TV2 9TT7 9O3W 8QYX 8YOO 8QFD 9SPI 9C3H 8A3D 9SPF 9O3V 9S3D 9I2D 9S3B 9S3C 9QLO 9PBE 8G5Y 9RUC 9PKD 9QLQ 8YOP 9O3Y 9P7D 8QOI 9P8B 8G5Z 8JDK 9P7E 8G60 9RPV 9GUL 6ZMI 9FQZ 8XSX 9QLP 8JDL 9P73 8JDJ 7F5S 8OJ5 8K2C 9P7O 9RPV 9RUA 9P7Y 7XNY 9P7C 8FLE 9PA7 6ZM7 9P9J 9MNC 9P7A 9VXN 9P7X 9P9I 8JDM 7OW7 7XNX 6QZP 8IFD 8FLB 8FLD 8FL7 9P72 9P7K 9P76 9P9H 8OHD 9P78 6Y2L 8G61 9P7N 8IFE 9RU9 6Y6X 9GMO 9P7W 6Z6M 6ZME 9P6Z 9I2E 7QVP 9RU8 8FL2 6ZMO 9P7L 8FLA 9RU7 22TU 8FL6 9KZU 8FL3 8Y0X 8Y0W 9B0P 6LQM 9GY4 8IDT 9WW4 9PKB 9P9K 8G6J 6Y0G 9P8H 8INF 8FLF 9N9J 7QVP 9I14 6OM0 8XSY 8OJ8 9G8M 8OJ0 6LSR 6OLE 28LN 6XA1 6LU8 8FKV 8FL9 8RL2 9P8C 9P79 8FKW 8XSZ 9KZX 9QIW 8IDY 7BHP 8FLC 9M0P 6Y57 8INE 6LSS 8FKY 8FKX 9B0Q 9PKG 8IPY 8INK 9B0S 9Y4G 9SYR 8FL4 9B0Q 4UG0 8IPD 9P7G 9P7F 8FKQ 8FKU 8FKS 8FKT 6OLI 8FKR 9B0S 8IE3 9P7I 9Y49 8ONY 9P7H 8FKP 8IR1 8IR3 6IP5 9P8I 9P7J 5T2C 6W6L 6OLG 8FKZ 6IP8 6OLF 5LKS 6OLZ 8FL0 7ZFW 6OM7 9GJ6 6IP6 4V6X 8IPX 5A8L 6SXO 9GJ5 6Z6N 6Z6L 5AJ0 9RG7Structures from NR_all_65061.64