RNA 3D Hub //

9XWO Summary

View in PDB or NAKB
Circular interaction diagram
Structure title
Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
Authors
Iso, K., Ando, Y., Taguchi, H., Nureki, O., Chadani, Y., Itoh, Y.
Release date
2026-06-17
Experimental technique
ELECTRON MICROSCOPY
Resolution
2.9 Å
Chains
7 RNA chains from Escherichia coli
51 other chains
Nucleic acid compounds
E-site tRNA (tRNAAla), 16S rRNA, SecM mRNA, A-site tRNA (prolyl-tRNAPro), P-site tRNA (tRNAGly), 23S rRNA, 5S rRNA
Other compounds
Large ribosomal subunit protein bL33, 50S ribosomal protein L34, Large ribosomal subunit protein bL35, 50S ribosomal protein L36, 50S ribosomal protein L31, Secretion monitor, Large ribosomal subunit protein uL1, 30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, fully modified isoform, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein S21, Large ribosomal subunit protein uL2, 50S ribosomal protein L3, 50S ribosomal protein L4, Large ribosomal subunit protein uL5, Large ribosomal subunit protein uL6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, Large ribosomal subunit protein bL17, Large ribosomal subunit protein uL18, Large ribosomal subunit protein bL19, Large ribosomal subunit protein bL20, 50S ribosomal protein L21, 50S ribosomal protein L22, Large ribosomal subunit protein uL23, 50S ribosomal protein L24, 50S ribosomal protein L25, Large ribosomal subunit protein bL27, Large ribosomal subunit protein bL28, Large ribosomal subunit protein uL29, Large ribosomal subunit protein uL30, Large ribosomal subunit protein bL32

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 9XWO contains:
  • 108 hairpin loops from 0 motif groups
  • 181 internal loops from 0 motif groups
  • 66 junction loops from 0 motif groups
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3D Redundancy

9XWO has chains which belong to the following equivalence classes in the current representative set:

Similar structures

9HM4
Structures from NR_all_96898.1
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