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9YPV Summary

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Circular interaction diagram PDF
Structure title
GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
Authors
Susorov, D., Korostelev, A.A.
Release date
2025-12-17
Experimental technique
ELECTRON MICROSCOPY
Resolution
3.0 Å
Chains
8 RNA chains from Oryctolagus cuniculus, Homo sapiens, Saccharomyces cerevisiae
76 other chains
Nucleic acid compounds
MF mRNA, Met-tRNA, Phe-tRNA, Met-tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA
Other compounds
Ribosomal protein L8, uS2 (SA), Ribosomal protein L3, 40S ribosomal protein S3a, 60S ribosomal protein L4, Small ribosomal subunit protein uS5, Large ribosomal subunit protein uL18, Ribosomal protein S3, 60S ribosomal protein L6, eS4 (S4 X isoform), Ribosomal protein S5, 60S ribosomal protein L7a, 40S ribosomal protein S6, 60S ribosomal protein L9, 40S ribosomal protein S7, 60S ribosomal protein L10, 40S ribosomal protein S8, Ribosomal protein L11, Ribosomal protein S9 (Predicted), 60S ribosomal protein L7, Small ribosomal subunit protein eS10, 60S ribosomal protein L13, Ribosomal protein S11, 60S ribosomal protein L14, 40S ribosomal protein S12, Ribosomal protein L15, Ribosomal protein S13, Large ribosomal subunit protein uL13, Small ribosomal subunit protein uS11, Large ribosomal subunit protein uL22, uS19, Ribosomal protein L18, uS9, Ribosomal protein L19, eS17, 60S ribosomal protein L18a, uS13, eL21, eS19, eL22, uS10, Ribosomal protein L23, eS21, eL24, Ribosomal protein S15a, eL23, uS12, uL24, 40S ribosomal protein S24, 60S ribosomal protein L27, eS25, 60S ribosomal protein L27a, 40S ribosomal protein S26, Large ribosomal subunit protein eL29, 40S ribosomal protein S27, eL30, Ribosomal protein S28, eL31, eS29, Ribosomal protein L32, 40S ribosomal protein S30, eL33, Ribosomal protein S27a, Large ribosomal subunit protein eL34, RACK1, eL35, 60S ribosomal protein L36, Ribosomal protein L37, GTP-binding protein 1, eL38, eL39, Ubiquitin-ribosomal protein eL40 fusion protein, eL41, Large ribosomal subunit protein eL42, eL43, eL28

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 9YPV contains:
  • 117 hairpin loops from 0 motif groups
  • 268 internal loops from 0 motif groups
  • 69 junction loops from 0 motif groups
More

3D Redundancy

9YPV has chains which belong to the following equivalence classes in the current representative set:

Similar structures

8XSX 6ZP4 8PPL 9YQ1 9YQ0 8K2C 7QVP 8PJ5 9KRP 7A09 8PJ6 9YPO 6Y57 8XSZ 9KN6 9YPS 9YPT 8PJ4 8PJ1 4UG0 8PJ2 9YQ1 9YQ0 7TQL 8PJ3 5T2C 9YPS 9YPO 9YPT 8XSZ 8XSY 6FEC 4V6X 4KZZ 6QZP
Structures from NR_all_83098.7
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