9YQ0 Summary
- Structure title
- Vacant ribosome with P-site tRNA, substate 2, Structure Ib
- Authors
- Susorov, D., Korostelev, A.A.
- Release date
- 2025-12-17
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
- Chains
- 7 RNA chains from Homo sapiens, Oryctolagus cuniculus
- 75 other chains
- Nucleic acid compounds
- Other compounds
- MF mRNA, Met-tRNA, Met-tRNA, 28S ribosomal RNA, 5S ribosomal RNA, 5.8S ribosomal RNA, 18S ribosomal RNA
- Ribosomal protein L8, uS2 (SA), Ribosomal protein L3, 40S ribosomal protein S3a, 60S ribosomal protein L4, Small ribosomal subunit protein uS5, Large ribosomal subunit protein uL18, Ribosomal protein S3, 60S ribosomal protein L6, eS4 (S4 X isoform), Ribosomal protein S5, 60S ribosomal protein L7a, 40S ribosomal protein S6, 60S ribosomal protein L9, 40S ribosomal protein S7, 60S ribosomal protein L10, 40S ribosomal protein S8, Ribosomal protein L11, Ribosomal protein S9 (Predicted), 60S ribosomal protein L7, S10_plectin domain-containing protein, 60S ribosomal protein L13, Ribosomal protein S11, 60S ribosomal protein L14, 40S ribosomal protein S12, Ribosomal protein L15, Ribosomal protein S13, Large ribosomal subunit protein uL13, Small ribosomal subunit protein uS11, Large ribosomal subunit protein uL22, uS19, Ribosomal protein L18, uS9, Ribosomal protein L19, eS17, 60S ribosomal protein L18a, uS13, eL21, eS19, eL22, uS10, Ribosomal protein L23, eS21, eL24, Ribosomal protein S15a, eL23, uS12, uL24, 40S ribosomal protein S24, 60S ribosomal protein L27, eS25, 60S ribosomal protein L27a, 40S ribosomal protein S26, Large ribosomal subunit protein eL29, 40S ribosomal protein S27, eL30, Ribosomal protein S28, eL31, eS29, Ribosomal protein L32, 40S ribosomal protein S30, eL33, Ribosomal protein S27a, Large ribosomal subunit protein eL34, RACK1, eL35, 60S ribosomal protein L36, Ribosomal protein L37, eL38, eL39, Ubiquitin A-52 residue ribosomal protein fusion product 1, eL41, Large ribosomal subunit protein eL42, eL43, eL28
Pairwise Interactions
Interactions annotated by FR3D:- 2,229 base-pairs
- 5,926 base-stacking
- 255 base-phosphate
- 318 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 9YQ0 contains:- 113 hairpin loops from 0 motif groups
- 269 internal loops from 0 motif groups
- 68 junction loops from 0 motif groups
3D Redundancy
9YQ0 has chains which belong to the following equivalence classes in the current representative set:- NR_all_06650.45 (1)
- NR_all_10255.45 (1)
- NR_all_21280.44 (1)
- NR_all_83098.7 (2)
- NR_4.0_06650.45 (1)
- NR_4.0_10255.45 (1)
- NR_4.0_21280.44 (1)
- NR_4.0_83098.7 (2)
- NR_3.5_06650.45 (1)
- NR_3.5_10255.45 (1)
- NR_3.5_21280.44 (1)
- NR_3.5_83098.7 (2)
- NR_3.0_06650.45 (1)
- NR_3.0_10255.45 (1)
- NR_3.0_21280.44 (1)
- NR_3.0_83098.7 (2)
- NR_20.0_06650.45 (1)
- NR_20.0_10255.45 (1)
- NR_20.0_21280.44 (1)
- NR_20.0_83098.7 (2)