1 | ➜ | 3PYO | 0.5621 | 0 | | A | 23S ribosomal RNA | U | 305 | U | 306 | G | 307 | G | 308 | G | 309 | A | 310 | A | 311 | G | 312 | cWW | tWH | | | |
2 | ➜ | 3ICQ | 0.4702 | 1 | T-loop with 2 stacked bulged bases | E | RNA (62-MER) | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 60 | C | 61 | cWW | tWH | | | |
3 | ➜ | 1O0C | 0.4691 | 1 | | B | Glutaminyl tRNA | G | 953 | U | 954 | U | 955 | C | 956 | G | 957 | A | 958 | U | 960 | C | 961 | cWW | tWH | | | |
4 | ➜ | 1S72 | 0.4281 | 1 | | 0 | LSU rRNA | G | 1387 | U | 1388 | G | 1389 | A | 1390 | G | 1391 | A | 1392 | C | 1394 | C | 1395 | cWW | tWH | | | |
5 | ➜ | 2ZNI | 0.4420 | 1 | | D | bacterial tRNA | G | 53 | U | 54 | G | 55 | A | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
6 | ➜ | 1GAX | 0.4214 | 1 | | C | TRNA(VAL) | G | 952 | U | 953 | U | 954 | C | 955 | A | 956 | A | 957 | U | 959 | C | 960 | cWW | tWH | | | |
7 | ➜ | 1WZ2 | 0.5375 | 1 | T-loop with 2 stacked bulged bases | D | tRNA | G | 965 | U | 966 | U | 967 | C | 968 | G | 969 | A | 970 | U | 972 | C | 973 | cWW | tWH | | | |
8 | ➜ | 2DR8 | 0.4396 | 1 | | B | tRNA (33-MER) | G | 12 | U | 13 | U | 14 | C | 15 | G | 16 | A | 17 | U | 19 | C | 20 | cWW | tWH | | | |
9 | ➜ | 2DU3 | 0.3886 | 1 | T-loop with 2 stacked bulged bases | D | tRNA | G | 952 | U | 953 | U | 954 | C | 955 | G | 956 | A | 957 | U | 959 | C | 960 | cWW | tWH | | | |
10 | ➜ | 2ZUE | 0.3762 | 1 | T-loop with 2 stacked bulged bases | B | tRNA-Arg | G | 953 | U | 954 | U | 955 | C | 956 | A | 957 | A | 958 | U | 960 | C | 961 | cWW | tWH | | | |
11 | ➜ | 2QBG | 0.4714 | 1 | | B | 23S rRNA | G | 1281 | U | 1282 | G | 1283 | A | 1284 | A | 1285 | A | 1286 | G | 1288 | C | 1289 | cWW | tWH | | | |
12 | ➜ | 2NR0 | 0.4410 | 1 | | E | leucyl tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | ntWH |
13 | ➜ | 3OVA | 0.4939 | 1 | | C | RNA (34-MER) | G | 12 | U | 13 | U | 14 | C | 15 | A | 16 | A | 17 | U | 19 | C | 20 | cWW | tWH | | | |
14 | ➜ | 2NQP | 0.5024 | 1 | | F | transfer RNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | tSH | |
15 | ➜ | 2ZNI | 0.4783 | 1 | T-loop with 2 stacked bulged bases | C | bacterial tRNA | G | 53 | U | 54 | G | 55 | A | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | ntWH | | | |
16 | ➜ | 3A2K | 0.4251 | 1 | | C | bacterial tRNA | G | 54 | U | 55 | U | 56 | C | 57 | G | 58 | A | 59 | U | 61 | C | 62 | cWW | tWH | | | |
17 | ➜ | 2DER | 0.4611 | 1 | T-loop with 2 stacked bulged bases | D | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
18 | ➜ | 2QBG | 0.5130 | 0 | | B | 23S rRNA | C | 305 | U | 306 | G | 307 | G | 308 | A | 309 | A | 310 | A | 311 | G | 312 | cWW | tWH | | | |
19 | ➜ | 1S72 | 0.5123 | 0 | | 0 | LSU rRNA | U | 312 | U | 313 | G | 314 | G | 315 | A | 316 | A | 317 | C | 318 | A | 319 | cWW | tWH | | | |
20 | ➜ | 2CSX | 0.3932 | 1 | T-loop with 2 stacked bulged bases | C | RNA (75-MER) | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
21 | ➜ | 2BTE | 0.3722 | 1 | | E | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
22 | ➜ | 1J2B | 0.3362 | 1 | | D | tRNA(Val) | G | 954 | U | 955 | U | 956 | C | 957 | A | 958 | A | 959 | U | 961 | C | 962 | cWW | tWH | | ntSH | |
23 | ➜ | 2ZJR | 0.2888 | 0 | | X | LSU rRNA | C | 316 | U | 317 | G | 318 | G | 319 | A | 320 | A | 321 | A | 322 | G | 323 | cWW | tWH | | | |
24 | ➜ | 3ADC | 0.2988 | 1 | | C | Selenocysteine transfer RNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
25 | ➜ | 1J2B | 0.3204 | 1 | Other HL | C | tRNA(Val) | G | 954 | U | 955 | U | 956 | C | 957 | A | 958 | A | 959 | U | 961 | C | 962 | cWW | tWH | | | |
26 | ➜ | 1J1U | 0.3303 | 1 | T-loop with 2 stacked bulged bases | B | tRNA(Tyr) | G | 554 | U | 555 | U | 556 | C | 557 | A | 558 | A | 559 | U | 561 | C | 562 | cWW | tWH | | | |
27 | ➜ | 2AKE | 0.3334 | 1 | | B | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
28 | ➜ | 1QU2 | 0.2984 | 1 | T-loop with 2 stacked bulged bases | T | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
29 | ➜ | 2AZX | 0.3044 | 1 | | C | 72-MER | G | 553 | U | 554 | U | 555 | C | 556 | G | 557 | A | 558 | U | 560 | C | 561 | cWW | tWH | | | |
30 | ➜ | 2ZZN | 0.2664 | 1 | T-loop with 2 stacked bulged bases | D | RNA (71-MER) | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
31 | ➜ | 1U0B | 0.2801 | 1 | T-loop with 2 stacked bulged bases | A | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
32 | ➜ | 2A64 | 0.2632 | 0 | T-loop with 1 bulged base | A | ribonuclease P RNA | C | 69 | U | 70 | G | 71 | A | 72 | G | 73 | A | 74 | U | 75 | G | 76 | cWW | ntWH | | | |
33 | ➜ | 3DHS | 0.2474 | 0 | | A | RNase P RNA | C | 69 | U | 70 | G | 71 | A | 72 | G | 73 | A | 74 | U | 75 | G | 76 | cWW | tWH | | | |
34 | ➜ | 2CV1 | 0.2510 | 1 | | C | tRNA | G | 553 | U | 554 | U | 555 | C | 556 | G | 557 | A | 558 | U | 560 | C | 561 | cWW | tWH | | | |
35 | ➜ | 2ZM5 | 0.2742 | 1 | | C | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
36 | ➜ | 3OUY | 0.2512 | 1 | | C | RNA (35-MER) | G | 12 | U | 13 | U | 14 | C | 15 | A | 16 | A | 17 | U | 19 | C | 20 | cWW | ntWH | ncWW | | |
37 | ➜ | 3AL0 | 0.2732 | 1 | T-loop with 2 stacked bulged bases | E | tRNAGln | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
38 | ➜ | 2NRE | 0.2968 | 1 | | F | leucyl tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
39 | ➜ | 2D6F | 0.2926 | 1 | | E | tRNA | G | 953 | U | 954 | U | 955 | C | 956 | G | 957 | A | 958 | U | 960 | C | 961 | cWW | tWH | | | |
40 | ➜ | 2DER | 0.4559 | 1 | | C | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
41 | ➜ | 3G78 | 0.3412 | 1 | | A | Group II catalytic intron D1-D4-1 | G | 30 | U | 31 | G | 32 | A | 33 | G | 34 | A | 35 | U | 37 | C | 38 | cWW | tWH | | | |
42 | ➜ | 3A2K | 0.2643 | 1 | | D | bacterial tRNA | G | 54 | U | 55 | U | 56 | C | 57 | G | 58 | A | 59 | U | 61 | C | 62 | cWW | tWH | | | |
43 | ➜ | 2AZX | 0.2950 | 1 | T-loop with 2 stacked bulged bases | D | 72-MER | G | 553 | U | 554 | U | 555 | C | 556 | G | 557 | A | 558 | U | 560 | C | 561 | cWW | tWH | | | |
44 | ➜ | 2D6F | 0.2810 | 1 | T-loop with 2 stacked bulged bases | F | tRNA | G | 953 | U | 954 | U | 955 | C | 956 | G | 957 | A | 958 | U | 960 | C | 961 | cWW | tWH | | | |
45 | ➜ | 3Q1Q | 0.2622 | 1 | | C | TRNA (PHE) | G | 63 | U | 64 | U | 65 | C | 66 | G | 67 | A | 68 | U | 70 | C | 71 | cWW | tWH | ncWW | | |
46 | ➜ | 3O58 | 0.2557 | 0 | | 1 | 25S ribosomal RNA | U | 194 | U | 195 | G | 196 | G | 197 | A | 198 | A | 199 | C | 200 | A | 201 | cWW | tWH | | | |
47 | ➜ | 2BTE | 0.2595 | 1 | T-loop with 2 stacked bulged bases | B | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
48 | ➜ | 3O58 | 0.2542 | 1 | | 1 | 25S ribosomal RNA | A | 1462 | U | 1463 | G | 1464 | A | 1465 | G | 1466 | A | 1467 | C | 1469 | U | 1470 | cWW | tWH | | | |
49 | ➜ | 3EPH | 0.2519 | 1 | | F | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 60 | C | 61 | cWW | tWH | | | |
50 | ➜ | 3AM1 | 0.3221 | 1 | T-loop with 2 stacked bulged bases | B | ASL-truncated tRNA | G | 59 | U | 60 | U | 61 | C | 62 | G | 63 | A | 64 | U | 66 | C | 67 | cWW | tWH | | | |
51 | ➜ | 2ZJR | 0.3632 | 1 | | X | LSU rRNA | G | 1294 | U | 1295 | G | 1296 | A | 1297 | G | 1298 | A | 1299 | U | 1301 | C | 1302 | cWW | tWH | | | |
52 | ➜ | 2NR0 | 0.3991 | 1 | | G | leucyl tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
53 | ➜ | 3ADD | 0.2707 | 1 | T-loop with 2 stacked bulged bases | C | Selenocysteine transfer RNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
54 | ➜ | 2ZZM | 0.2808 | 1 | T-loop with 2 stacked bulged bases | B | RNA (84-MER) | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
55 | ➜ | 3PYO | 0.3174 | 1 | | A | 23S ribosomal RNA | G | 1281 | U | 1282 | G | 1283 | A | 1284 | G | 1285 | A | 1286 | U | 1288 | C | 1289 | cWW | tWH | | | |
56 | ➜ | 3O58 | 0.2556 | 2 | | 1 | 25S ribosomal RNA | U | 640 | C | 641 | U | 642 | U | 643 | G | 644 | A | 645 | A | 647 | A | 649 | cWW | | | | |
57 | ➜ | 1WZ2 | 0.3219 | 1 | | C | tRNA | G | 965 | U | 966 | U | 967 | C | 968 | G | 969 | A | 970 | U | 972 | C | 973 | cWW | tWH | | | |
58 | ➜ | 3A3A | 0.3246 | 1 | | A | Selenocysteine transfer RNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
59 | ➜ | 2NR0 | 0.2748 | 1 | | F | leucyl tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | ntWH | ncWW | | ntWH |
60 | ➜ | 2QBG | 0.2450 | 2 | | B | 23S rRNA | U | 566 | U | 567 | U | 568 | U | 569 | G | 570 | U | 571 | U | 573 | A | 575 | cWW | | | | |
61 | ➜ | 2DU6 | 0.2524 | 1 | | D | tRNA | G | 952 | U | 953 | U | 954 | C | 955 | G | 956 | A | 957 | U | 959 | C | 960 | cWW | ntWH | | | |
62 | ➜ | 2ZZN | 0.2998 | 1 | | C | RNA (71-MER) | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
63 | ➜ | 2FK6 | 0.2775 | 1 | | R | TRNA(THR) | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 60 | C | 61 | cWW | tWH | | | |
64 | ➜ | 3L0U | 0.2896 | 1 | | A | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
65 | ➜ | 3ADC | 0.3274 | 1 | | D | Selenocysteine transfer RNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
66 | ➜ | 3ADD | 0.3299 | 1 | | D | Selenocysteine transfer RNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | | | |
67 | ➜ | 3F4G | 0.2936 | 1 | | Y | FMN riboswitch | G | 68 | U | 69 | G | 70 | A | 71 | A | 72 | A | 73 | U | 75 | C | 76 | cWW | tWH | | | |
68 | ➜ | 3F4G | 0.2807 | 1 | | X | FMN riboswitch | G | 17 | U | 18 | G | 19 | A | 20 | A | 21 | A | 22 | U | 24 | C | 25 | cWW | tWH | | | |
69 | ➜ | 2NR0 | 0.0000 | 1 | | H | leucyl tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | ntWH | | | |
70 | ➜ | 2CV1 | 0.2713 | 1 | | D | tRNA | G | 553 | U | 554 | U | 555 | C | 556 | G | 557 | A | 558 | U | 560 | C | 561 | cWW | tWH | | | |
71 | ➜ | 3ICQ | 0.2930 | 1 | | D | RNA (62-MER) | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 60 | C | 61 | cWW | ntWH | | | |
72 | ➜ | 1GAX | 0.3957 | 1 | T-loop with 2 stacked bulged bases | D | TRNA(VAL) | G | 952 | U | 953 | U | 954 | C | 955 | A | 956 | A | 957 | U | 959 | C | 960 | cWW | tWH | | | |