Motif HL_05993.1 Version HL_05993.1 of this group appears in releases 0.1 to 0.2
#D - ordering by discrepancy relative to the exemplar,
#S - ordering by similarity (same as in the heat map).
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#D | #S | Loop id | PDB | Disc | #Non-core | Annotation | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-8 | 3-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
55 | 1 | ➜ | 3PYO | 0.5621 | 0 | U | 305 | U | 306 | G | 307 | G | 308 | G | 309 | A | 310 | A | 311 | G | 312 | cWW | tWH | |||
46 | 2 | ➜ | 3ICQ | 0.4702 | 1 | T-loop with 2 stacked bulged bases | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 60 | C | 61 | cWW | tWH | ncWW | |
16 | 3 | ➜ | 1O0C | 0.4691 | 1 | G | 953 | U | 954 | U | 955 | C | 956 | G | 957 | A | 958 | U | 960 | C | 961 | cWW | tWH | |||
69 | 4 | ➜ | 1S72 | 0.4281 | 1 | G | 1387 | U | 1388 | G | 1389 | A | 1390 | G | 1391 | A | 1392 | C | 1394 | C | 1395 | cWW | tWH | |||
67 | 5 | ➜ | 2ZNI | 0.4420 | 1 | G | 53 | U | 54 | G | 55 | A | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
28 | 6 | ➜ | 1GAX | 0.4214 | 1 | G | 952 | U | 953 | U | 954 | C | 955 | A | 956 | A | 957 | U | 959 | C | 960 | cWW | ntWH | |||
10 | 7 | ➜ | 1WZ2 | 0.5375 | 1 | T-loop with 2 stacked bulged bases | G | 965 | U | 966 | U | 967 | C | 968 | G | 969 | A | 970 | U | 972 | C | 973 | cWW | tWH | ||
64 | 8 | ➜ | 2DR8 | 0.4396 | 1 | G | 12 | U | 13 | U | 14 | C | 15 | G | 16 | A | 17 | U | 19 | C | 20 | cWW | tWH | ncWW | ||
32 | 9 | ➜ | 2DU3 | 0.3886 | 1 | T-loop with 2 stacked bulged bases | G | 952 | U | 953 | U | 954 | C | 955 | G | 956 | A | 957 | U | 959 | C | 960 | cWW | ntWH | ||
8 | 10 | ➜ | 2ZUE | 0.3762 | 1 | T-loop with 2 stacked bulged bases | G | 953 | U | 954 | U | 955 | C | 956 | A | 957 | A | 958 | U | 960 | C | 961 | cWW | tWH | ||
68 | 11 | ➜ | 2QBG | 0.4714 | 1 | G | 1281 | U | 1282 | G | 1283 | A | 1284 | A | 1285 | A | 1286 | G | 1288 | C | 1289 | cWW | tWH | |||
20 | 12 | ➜ | 2NR0 | 0.4410 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
56 | 13 | ➜ | 3OVA | 0.4939 | 1 | G | 12 | U | 13 | U | 14 | C | 15 | A | 16 | A | 17 | U | 19 | C | 20 | cWW | tWH | ncWW | ||
5 | 14 | ➜ | 2NQP | 0.5024 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
65 | 15 | ➜ | 2ZNI | 0.4783 | 1 | T-loop with 2 stacked bulged bases | G | 53 | U | 54 | G | 55 | A | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | |
26 | 16 | ➜ | 3A2K | 0.4251 | 1 | G | 54 | U | 55 | U | 56 | C | 57 | G | 58 | A | 59 | U | 61 | C | 62 | cWW | tWH | |||
37 | 17 | ➜ | 2DER | 0.4611 | 1 | T-loop with 2 stacked bulged bases | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | |
43 | 18 | ➜ | 2QBG | 0.5130 | 0 | C | 305 | U | 306 | G | 307 | G | 308 | A | 309 | A | 310 | A | 311 | G | 312 | cWW | tWH | |||
59 | 19 | ➜ | 1S72 | 0.5123 | 0 | U | 312 | U | 313 | G | 314 | G | 315 | A | 316 | A | 317 | C | 318 | A | 319 | cWW | tWH | |||
30 | 20 | ➜ | 2CSX | 0.3932 | 1 | T-loop with 2 stacked bulged bases | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | |
4 | 21 | ➜ | 2BTE | 0.3722 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
62 | 22 | ➜ | 1J2B | 0.3362 | 1 | G | 954 | U | 955 | U | 956 | C | 957 | A | 958 | A | 959 | U | 961 | C | 962 | cWW | tWH | ntSH | ||
27 | 23 | ➜ | 2ZJR | 0.2888 | 0 | C | 316 | U | 317 | G | 318 | G | 319 | A | 320 | A | 321 | A | 322 | G | 323 | cWW | tWH | |||
39 | 24 | ➜ | 3ADC | 0.2988 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
54 | 25 | ➜ | 1J2B | 0.3204 | 1 | G | 954 | U | 955 | U | 956 | C | 957 | A | 958 | A | 959 | U | 961 | C | 962 | cWW | tWH | ntSH | ||
11 | 26 | ➜ | 1J1U | 0.3303 | 1 | T-loop with 2 stacked bulged bases | G | 554 | U | 555 | U | 556 | C | 557 | A | 558 | A | 559 | U | 561 | C | 562 | cWW | tWH | ||
48 | 27 | ➜ | 2AKE | 0.3334 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
17 | 28 | ➜ | 1QU2 | 0.2984 | 1 | T-loop with 2 stacked bulged bases | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | |
23 | 29 | ➜ | 2AZX | 0.3044 | 1 | G | 553 | U | 554 | U | 555 | C | 556 | G | 557 | A | 558 | U | 560 | C | 561 | cWW | tWH | |||
14 | 30 | ➜ | 2ZZN | 0.2664 | 1 | T-loop with 2 stacked bulged bases | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | |
35 | 31 | ➜ | 1U0B | 0.2801 | 1 | T-loop with 2 stacked bulged bases | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | |
42 | 32 | ➜ | 2A64 | 0.2632 | 0 | T-loop with 1 bulged base | C | 69 | U | 70 | G | 71 | A | 72 | G | 73 | A | 74 | U | 75 | G | 76 | cWW | tWH | ||
33 | 33 | ➜ | 3DHS | 0.2474 | 0 | C | 69 | U | 70 | G | 71 | A | 72 | G | 73 | A | 74 | U | 75 | G | 76 | cWW | tWH | |||
29 | 34 | ➜ | 2CV1 | 0.2510 | 1 | G | 553 | U | 554 | U | 555 | C | 556 | G | 557 | A | 558 | U | 560 | C | 561 | cWW | tWH | |||
40 | 35 | ➜ | 2ZM5 | 0.2742 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
70 | 36 | ➜ | 3OUY | 0.2512 | 1 | G | 12 | U | 13 | U | 14 | C | 15 | A | 16 | A | 17 | U | 19 | C | 20 | cWW | tWH | ncWW | ||
9 | 37 | ➜ | 3AL0 | 0.2732 | 1 | T-loop with 2 stacked bulged bases | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | |
22 | 38 | ➜ | 2NRE | 0.2968 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
34 | 39 | ➜ | 2D6F | 0.2926 | 1 | G | 953 | U | 954 | U | 955 | C | 956 | G | 957 | A | 958 | U | 960 | C | 961 | cWW | tWH | |||
36 | 40 | ➜ | 2DER | 0.4559 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
49 | 41 | ➜ | 3G78 | 0.3412 | 1 | G | 30 | U | 31 | G | 32 | A | 33 | G | 34 | A | 35 | U | 37 | C | 38 | cWW | tWH | |||
24 | 42 | ➜ | 3A2K | 0.2643 | 1 | G | 54 | U | 55 | U | 56 | C | 57 | G | 58 | A | 59 | U | 61 | C | 62 | cWW | tWH | |||
15 | 43 | ➜ | 2AZX | 0.2950 | 1 | T-loop with 2 stacked bulged bases | G | 553 | U | 554 | U | 555 | C | 556 | G | 557 | A | 558 | U | 560 | C | 561 | cWW | tWH | ||
18 | 44 | ➜ | 2D6F | 0.2810 | 1 | T-loop with 2 stacked bulged bases | G | 953 | U | 954 | U | 955 | C | 956 | G | 957 | A | 958 | U | 960 | C | 961 | cWW | tWH | ||
63 | 45 | ➜ | 3Q1Q | 0.2622 | 1 | G | 63 | U | 64 | U | 65 | C | 66 | G | 67 | A | 68 | U | 70 | C | 71 | cWW | tWH | ncWW | ||
61 | 46 | ➜ | 3O58 | 0.2557 | 0 | U | 194 | U | 195 | G | 196 | G | 197 | A | 198 | A | 199 | C | 200 | A | 201 | cWW | tWH | |||
2 | 47 | ➜ | 2BTE | 0.2595 | 1 | T-loop with 2 stacked bulged bases | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | |
66 | 48 | ➜ | 3O58 | 0.2542 | 1 | A | 1462 | U | 1463 | G | 1464 | A | 1465 | G | 1466 | A | 1467 | C | 1469 | U | 1470 | cWW | tWH | |||
58 | 49 | ➜ | 3EPH | 0.2519 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 60 | C | 61 | cWW | tWH | ncWW | ||
51 | 50 | ➜ | 3AM1 | 0.3221 | 1 | T-loop with 2 stacked bulged bases | G | 59 | U | 60 | U | 61 | C | 62 | G | 63 | A | 64 | U | 66 | C | 67 | cWW | tWH | ||
45 | 51 | ➜ | 2ZJR | 0.3632 | 1 | G | 1294 | U | 1295 | G | 1296 | A | 1297 | G | 1298 | A | 1299 | U | 1301 | C | 1302 | cWW | tWH | |||
3 | 52 | ➜ | 2NR0 | 0.3991 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
44 | 53 | ➜ | 3ADD | 0.2707 | 1 | T-loop with 2 stacked bulged bases | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | |
12 | 54 | ➜ | 2ZZM | 0.2808 | 1 | T-loop with 2 stacked bulged bases | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | |
57 | 55 | ➜ | 3PYO | 0.3174 | 1 | G | 1281 | U | 1282 | G | 1283 | A | 1284 | G | 1285 | A | 1286 | U | 1288 | C | 1289 | cWW | tWH | |||
60 | 56 | ➜ | 3O58 | 0.2556 | 2 | U | 640 | C | 641 | U | 642 | U | 643 | G | 644 | A | 645 | A | 647 | A | 649 | cWW | ||||
7 | 57 | ➜ | 1WZ2 | 0.3219 | 1 | G | 965 | U | 966 | U | 967 | C | 968 | G | 969 | A | 970 | U | 972 | C | 973 | cWW | tWH | |||
52 | 58 | ➜ | 3A3A | 0.3246 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
6 | 59 | ➜ | 2NR0 | 0.2748 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
19 | 60 | ➜ | 2QBG | 0.2450 | 2 | U | 566 | U | 567 | U | 568 | U | 569 | G | 570 | U | 571 | U | 573 | A | 575 | cWW | ||||
53 | 61 | ➜ | 2DU6 | 0.2524 | 1 | G | 952 | U | 953 | U | 954 | C | 955 | G | 956 | A | 957 | U | 959 | C | 960 | cWW | ntWH | |||
31 | 62 | ➜ | 2ZZN | 0.2998 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
13 | 63 | ➜ | 2FK6 | 0.2775 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 60 | C | 61 | cWW | tWH | ncWW | ||
21 | 64 | ➜ | 3L0U | 0.2896 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
50 | 65 | ➜ | 3ADC | 0.3274 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
41 | 66 | ➜ | 3ADD | 0.3299 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
72 | 67 | ➜ | 3F4G | 0.2936 | 1 | G | 68 | U | 69 | G | 70 | A | 71 | A | 72 | A | 73 | U | 75 | C | 76 | cWW | tWH | |||
71 | 68 | ➜ | 3F4G | 0.2807 | 1 | G | 17 | U | 18 | G | 19 | A | 20 | A | 21 | A | 22 | U | 24 | C | 25 | cWW | tWH | |||
1 | 69 | ➜ | 2NR0 | 0.0000 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 60 | C | 61 | cWW | tWH | ncWW | ||
25 | 70 | ➜ | 2CV1 | 0.2713 | 1 | G | 553 | U | 554 | U | 555 | C | 556 | G | 557 | A | 558 | U | 560 | C | 561 | cWW | tWH | |||
47 | 71 | ➜ | 3ICQ | 0.2930 | 1 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 60 | C | 61 | cWW | tWH | ncWW | ||
38 | 72 | ➜ | 1GAX | 0.3957 | 1 | T-loop with 2 stacked bulged bases | G | 952 | U | 953 | U | 954 | C | 955 | A | 956 | A | 957 | U | 959 | C | 960 | cWW | ntWH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUUCAAGUC | 15 |
GUUCGAAUC | 10 |
GUUCGAUUC | 7 |
GUUCAAAUC | 5 |
GUUCAAUUC | 5 |
GUUCGAGUC | 4 |
GUUCGAUCC | 3 |
GUUCGACUC | 3 |
GUGAAAUUC | 2 |
GUGAGAAUC | 2 |
CUGAGAUG | 2 |
CUGGAAAG | 2 |
UUGGAACA | 2 |
GUGAAACUC | 2 |
UUUUGUAUAA | 1 |
GUUCGAGCC | 1 |
GUGAGAACC | 1 |
UCUUGAAACA | 1 |
AUGAGAACU | 1 |
UUGGGAAG | 1 |
GUGAAAAGC | 1 |
GUGAGAGUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UUCAAGU | 15 |
UUCGAAU | 10 |
UUCGAUU | 7 |
UUCAAAU | 5 |
UUCAAUU | 5 |
UUCGAGU | 4 |
UUCGAUC | 3 |
UUCGACU | 3 |
UGAAAUU | 2 |
UGAGAAU | 2 |
UGAGAU | 2 |
UGGAAA | 2 |
UGAGAAC | 2 |
UGGAAC | 2 |
UGAAACU | 2 |
UUCGAGC | 1 |
UGGGAA | 1 |
UUUGUAUA | 1 |
CUUGAAAC | 1 |
UGAAAAG | 1 |
UGAGAGU | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
- Annotations
- T-loop with 2 stacked bulged bases (19)
- T-loop with 1 bulged base (1)
- Basepair signature
- Intraclusteral linkage
- Min 0.01 | Avg 0.33 | Max 0.67
Coloring options: