#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDisc#Non-coreAnnotation 1 2 3 4 5 6 7 81-82-62-83-5
5513PYO0.56210 U305U306G307G308G309A310A311G312cWWtWH
4623ICQ0.47021T-loop with 2 stacked bulged basesG53U54U55C56G57A58C60C61cWWtWHncWW
1631O0C0.46911 G953U954U955C956G957A958U960C961cWWtWH
6941S720.42811 G1387U1388G1389A1390G1391A1392C1394C1395cWWtWH
6752ZNI0.44201 G53U54G55A56A57A58U60C61cWWtWHncWW
2861GAX0.42141 G952U953U954C955A956A957U959C960cWWntWH
1071WZ20.53751T-loop with 2 stacked bulged basesG965U966U967C968G969A970U972C973cWWtWH
6482DR80.43961 G12U13U14C15G16A17U19C20cWWtWHncWW
3292DU30.38861T-loop with 2 stacked bulged basesG952U953U954C955G956A957U959C960cWWntWH
8102ZUE0.37621T-loop with 2 stacked bulged basesG953U954U955C956A957A958U960C961cWWtWH
68112QBG0.47141 G1281U1282G1283A1284A1285A1286G1288C1289cWWtWH
20122NR00.44101 G53U54U55C56A57A58U60C61cWWtWHncWW
56133OVA0.49391 G12U13U14C15A16A17U19C20cWWtWHncWW
5142NQP0.50241 G53U54U55C56A57A58U60C61cWWtWHncWW
65152ZNI0.47831T-loop with 2 stacked bulged basesG53U54G55A56A57A58U60C61cWWtWHncWW
26163A2K0.42511 G54U55U56C57G58A59U61C62cWWtWH
37172DER0.46111T-loop with 2 stacked bulged basesG53U54U55C56G57A58U60C61cWWtWHncWW
43182QBG0.51300 C305U306G307G308A309A310A311G312cWWtWH
59191S720.51230 U312U313G314G315A316A317C318A319cWWtWH
30202CSX0.39321T-loop with 2 stacked bulged basesG53U54U55C56G57A58U60C61cWWtWHncWW
4212BTE0.37221 G53U54U55C56A57A58U60C61cWWtWHncWW
62221J2B0.33621 G954U955U956C957A958A959U961C962cWWtWHntSH
27232ZJR0.28880 C316U317G318G319A320A321A322G323cWWtWH
39243ADC0.29881 G53U54U55C56A57A58U60C61cWWtWHncWW
54251J2B0.32041 G954U955U956C957A958A959U961C962cWWtWHntSH
11261J1U0.33031T-loop with 2 stacked bulged basesG554U555U556C557A558A559U561C562cWWtWH
48272AKE0.33341 G53U54U55C56G57A58U60C61cWWtWHncWW
17281QU20.29841T-loop with 2 stacked bulged basesG53U54U55C56A57A58U60C61cWWtWHncWW
23292AZX0.30441 G553U554U555C556G557A558U560C561cWWtWH
14302ZZN0.26641T-loop with 2 stacked bulged basesG53U54U55C56A57A58U60C61cWWtWHncWW
35311U0B0.28011T-loop with 2 stacked bulged basesG53U54U55C56G57A58U60C61cWWtWHncWW
42322A640.26320T-loop with 1 bulged baseC69U70G71A72G73A74U75G76cWWtWH
33333DHS0.24740 C69U70G71A72G73A74U75G76cWWtWH
29342CV10.25101 G553U554U555C556G557A558U560C561cWWtWH
40352ZM50.27421 G53U54U55C56G57A58U60C61cWWtWHncWW
70363OUY0.25121 G12U13U14C15A16A17U19C20cWWtWHncWW
9373AL00.27321T-loop with 2 stacked bulged basesG53U54U55C56G57A58U60C61cWWtWHncWW
22382NRE0.29681 G53U54U55C56A57A58U60C61cWWtWHncWW
34392D6F0.29261 G953U954U955C956G957A958U960C961cWWtWH
36402DER0.45591 G53U54U55C56G57A58U60C61cWWtWHncWW
49413G780.34121 G30U31G32A33G34A35U37C38cWWtWH
24423A2K0.26431 G54U55U56C57G58A59U61C62cWWtWH
15432AZX0.29501T-loop with 2 stacked bulged basesG553U554U555C556G557A558U560C561cWWtWH
18442D6F0.28101T-loop with 2 stacked bulged basesG953U954U955C956G957A958U960C961cWWtWH
63453Q1Q0.26221 G63U64U65C66G67A68U70C71cWWtWHncWW
61463O580.25570 U194U195G196G197A198A199C200A201cWWtWH
2472BTE0.25951T-loop with 2 stacked bulged basesG53U54U55C56A57A58U60C61cWWtWHncWW
66483O580.25421 A1462U1463G1464A1465G1466A1467C1469U1470cWWtWH
58493EPH0.25191 G53U54U55C56G57A58C60C61cWWtWHncWW
51503AM10.32211T-loop with 2 stacked bulged basesG59U60U61C62G63A64U66C67cWWtWH
45512ZJR0.36321 G1294U1295G1296A1297G1298A1299U1301C1302cWWtWH
3522NR00.39911 G53U54U55C56A57A58U60C61cWWtWHncWW
44533ADD0.27071T-loop with 2 stacked bulged basesG53U54U55C56A57A58U60C61cWWtWHncWW
12542ZZM0.28081T-loop with 2 stacked bulged basesG53U54U55C56A57A58U60C61cWWtWHncWW
57553PYO0.31741 G1281U1282G1283A1284G1285A1286U1288C1289cWWtWH
60563O580.25562 U640C641U642U643G644A645A647A649cWW
7571WZ20.32191 G965U966U967C968G969A970U972C973cWWtWH
52583A3A0.32461 G53U54U55C56A57A58U60C61cWWtWHncWW
6592NR00.27481 G53U54U55C56A57A58U60C61cWWtWHncWW
19602QBG0.24502 U566U567U568U569G570U571U573A575cWW
53612DU60.25241 G952U953U954C955G956A957U959C960cWWntWH
31622ZZN0.29981 G53U54U55C56A57A58U60C61cWWtWHncWW
13632FK60.27751 G53U54U55C56G57A58C60C61cWWtWHncWW
21643L0U0.28961 G53U54U55C56G57A58U60C61cWWtWHncWW
50653ADC0.32741 G53U54U55C56A57A58U60C61cWWtWHncWW
41663ADD0.32991 G53U54U55C56A57A58U60C61cWWtWHncWW
72673F4G0.29361 G68U69G70A71A72A73U75C76cWWtWH
71683F4G0.28071 G17U18G19A20A21A22U24C25cWWtWH
1692NR00.00001 G53U54U55C56A57A58U60C61cWWtWHncWW
25702CV10.27131 G553U554U555C556G557A558U560C561cWWtWH
47713ICQ0.29301 G53U54U55C56G57A58C60C61cWWtWHncWW
38721GAX0.39571T-loop with 2 stacked bulged basesG952U953U954C955A956A957U959C960cWWntWH

3D structures

Complete motif including flanking bases
SequenceCounts
GUUCAAGUC15
GUUCGAAUC10
GUUCGAUUC7
GUUCAAAUC5
GUUCAAUUC5
GUUCGAGUC4
GUUCGAUCC3
GUUCGACUC3
GUGAAAUUC2
GUGAGAAUC2
CUGAGAUG2
CUGGAAAG2
UUGGAACA2
GUGAAACUC2
UUUUGUAUAA1
GUUCGAGCC1
GUGAGAACC1
UCUUGAAACA1
AUGAGAACU1
UUGGGAAG1
GUGAAAAGC1
GUGAGAGUC1
Non-Watson-Crick part of the motif
SequenceCounts
UUCAAGU15
UUCGAAU10
UUCGAUU7
UUCAAAU5
UUCAAUU5
UUCGAGU4
UUCGAUC3
UUCGACU3
UGAAAUU2
UGAGAAU2
UGAGAU2
UGGAAA2
UGAGAAC2
UGGAAC2
UGAAACU2
UUCGAGC1
UGGGAA1
UUUGUAUA1
CUUGAAAC1
UGAAAAG1
UGAGAGU1

Release history

Release0.10.2
Date2011-12-082011-12-08
StatusNew id, no parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in HL_05993.1Only in the child motif
HL_72498.1
Compare
HL_3L0U_003, HL_2AZX_003, HL_3F4G_001, HL_3F4G_004, HL_2DU3_003, HL_3ADC_004, HL_2DER_006, HL_2D6F_006, HL_3AL0_003, HL_3ICQ_005, HL_1QU2_003, HL_2QBG_034, HL_1S72_034, HL_2CSX_003, HL_2ZJR_032, HL_2NR0_004, HL_3ADD_004, HL_2ZZN_003, HL_2FK6_002, HL_3A2K_003, HL_2CV1_006, HL_3AM1_004, HL_1WZ2_008, HL_3OUY_001, HL_2NRE_003, HL_1J1U_003, HL_3G78_001, HL_2ZZM_004, HL_2ZNI_003, HL_1J2B_004, HL_1U0B_003, HL_1J2B_002, HL_2QBG_019, HL_2DU6_003, HL_2DR8_001, HL_2BTE_008, HL_3Q1Q_011, HL_1GAX_006, HL_2AKE_003, HL_2BTE_004, HL_3OVA_001, HL_2ZM5_003HL_2D6F_003, HL_2AZX_006, HL_2ZUE_003, HL_3A3A_004, HL_2DER_003, HL_3O58_031, HL_3O58_014, HL_1S72_010, HL_3ICQ_002, HL_3ADC_008, HL_2NR0_007, HL_3ADD_008, HL_2ZZN_006, HL_2QBG_011, HL_1WZ2_004, HL_3A2K_006, HL_2CV1_003, HL_3DHS_002, HL_1O0C_003, HL_2A64_002, HL_3EPH_006, HL_2ZJR_009, HL_3O58_005, HL_3PYO_032, HL_2NR0_010, HL_2NR0_013, HL_3PYO_010, HL_2ZNI_006, HL_2NQP_004, HL_1GAX_003HL_3U5H_014, HL_3EPH_003, HL_4A1B_015, HL_3RG5_004, HL_3V2F_018, HL_4A1B_030, HL_3U5H_031, HL_3V2F_030, HL_2ZUF_003, HL_3TUP_003, HL_3AMU_003, HL_2ZJR_017, HL_4AQ7_003, HL_1QRS_003
HL_97270.1
Compare
HL_2ZJR_009, HL_1S72_010, HL_2QBG_011, HL_2A64_002, HL_3DHS_002HL_2D6F_003, HL_2AZX_006, HL_2ZUE_003, HL_3A3A_004, HL_1U0B_003, HL_2AZX_003, HL_3F4G_001, HL_2QBG_019, HL_2DU3_003, HL_2DER_003, HL_3ADC_004, HL_2DER_006, HL_3O58_014, HL_3AL0_003, HL_3ICQ_002, HL_2ZM5_003, HL_3ADC_008, HL_1QU2_003, HL_2D6F_006, HL_2QBG_034, HL_1S72_034, HL_2NR0_007, HL_2CSX_003, HL_2ZJR_032, HL_2NR0_004, HL_2AKE_003, HL_2ZZN_006, HL_3ICQ_005, HL_2ZZN_003, HL_2FK6_002, HL_1WZ2_004, HL_3A2K_006, HL_3A2K_003, HL_3Q1Q_011, HL_3AM1_004, HL_2CV1_003, HL_1WZ2_008, HL_3OUY_001, HL_1O0C_003, HL_2NRE_003, HL_3EPH_006, HL_1J1U_003, HL_3F4G_004, HL_3G78_001, HL_3O58_005, HL_2ZZM_004, HL_2CV1_006, HL_1J2B_004, HL_3PYO_032, HL_1J2B_002, HL_3ADD_008, HL_2NR0_010, HL_3L0U_003, HL_2NR0_013, HL_2DU6_003, HL_2ZNI_003, HL_3PYO_010, HL_2ZNI_006, HL_2DR8_001, HL_2NQP_004, HL_2BTE_008, HL_1GAX_003, HL_1GAX_006, HL_3ADD_004, HL_3O58_031, HL_2BTE_004, HL_3OVA_001HL_3V2F_010, HL_2GDI_002, HL_4A1B_005, HL_3U5F_006, HL_2HOJ_002, HL_2XZM_006, HL_4A1B_037, HL_1S72_039, HL_3U5H_005, HL_2GDI_004
Annotations
  • T-loop with 2 stacked bulged bases (19)
  • T-loop with 1 bulged base (1)
  • Basepair signature
    Intraclusteral linkage
    Min 0.01 | Avg 0.33 | Max 0.67
    Help

    Coloring options:

    Mutual discrepancy heat map legend: