Description:
No description added yet.
Basepair signature:
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.01 | Avg 0.33 | Max 0.67
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5 6 7 81-82-62-83-5
1692NR00.00001G53U54U55C56A57A58U60C61cWWtWHncWW
2472BTE0.25951G53U54U55C56A57A58U60C61cWWtWHncWW
3522NR00.39911G53U54U55C56A57A58U60C61cWWtWHncWW
4212BTE0.37221G53U54U55C56A57A58U60C61cWWtWHncWW
5142NQP0.50241G53U54U55C56A57A58U60C61cWWtWHncWW
6592NR00.27481G53U54U55C56A57A58U60C61cWWtWHncWW
7571WZ20.32191G965U966U967C968G969A970U972C973cWWtWH
8102ZUE0.37621G953U954U955C956A957A958U960C961cWWtWH
9373AL00.27321G53U54U55C56G57A58U60C61cWWtWHncWW
1071WZ20.53751G965U966U967C968G969A970U972C973cWWtWH
11261J1U0.33031G554U555U556C557A558A559U561C562cWWtWH
12542ZZM0.28081G53U54U55C56A57A58U60C61cWWtWHncWW
13632FK60.27751G53U54U55C56G57A58C60C61cWWtWHncWW
14302ZZN0.26641G53U54U55C56A57A58U60C61cWWtWHncWW
15432AZX0.29501G553U554U555C556G557A558U560C561cWWtWH
1631O0C0.46911G953U954U955C956G957A958U960C961cWWtWH
17281QU20.29841G53U54U55C56A57A58U60C61cWWtWHncWW
18442D6F0.28101G953U954U955C956G957A958U960C961cWWtWH
19602QBG0.24502U566U567U568U569G570U571U573A575cWW
20122NR00.44101G53U54U55C56A57A58U60C61cWWtWHncWW
21643L0U0.28961G53U54U55C56G57A58U60C61cWWtWHncWW
22382NRE0.29681G53U54U55C56A57A58U60C61cWWtWHncWW
23292AZX0.30441G553U554U555C556G557A558U560C561cWWtWH
24423A2K0.26431G54U55U56C57G58A59U61C62cWWtWH
25702CV10.27131G553U554U555C556G557A558U560C561cWWtWH
26163A2K0.42511G54U55U56C57G58A59U61C62cWWtWH
27232ZJR0.28880C316U317G318G319A320A321A322G323cWWtWH
2861GAX0.42141G952U953U954C955A956A957U959C960cWWntWH
29342CV10.25101G553U554U555C556G557A558U560C561cWWtWH
30202CSX0.39321G53U54U55C56G57A58U60C61cWWtWHncWW
31622ZZN0.29981G53U54U55C56A57A58U60C61cWWtWHncWW
3292DU30.38861G952U953U954C955G956A957U959C960cWWntWH
33333DHS0.24740C69U70G71A72G73A74U75G76cWWtWH
34392D6F0.29261G953U954U955C956G957A958U960C961cWWtWH
35311U0B0.28011G53U54U55C56G57A58U60C61cWWtWHncWW
36402DER0.45591G53U54U55C56G57A58U60C61cWWtWHncWW
37172DER0.46111G53U54U55C56G57A58U60C61cWWtWHncWW
38721GAX0.39571G952U953U954C955A956A957U959C960cWWntWH
39243ADC0.29881G53U54U55C56A57A58U60C61cWWtWHncWW
40352ZM50.27421G53U54U55C56G57A58U60C61cWWtWHncWW
41663ADD0.32991G53U54U55C56A57A58U60C61cWWtWHncWW
42322A640.26320C69U70G71A72G73A74U75G76cWWtWH
43182QBG0.51300C305U306G307G308A309A310A311G312cWWtWH
44533ADD0.27071G53U54U55C56A57A58U60C61cWWtWHncWW
45512ZJR0.36321G1294U1295G1296A1297G1298A1299U1301C1302cWWtWH
4623ICQ0.47021G53U54U55C56G57A58C60C61cWWtWHncWW
47713ICQ0.29301G53U54U55C56G57A58C60C61cWWtWHncWW
48272AKE0.33341G53U54U55C56G57A58U60C61cWWtWHncWW
49413G780.34121G30U31G32A33G34A35U37C38cWWtWH
50653ADC0.32741G53U54U55C56A57A58U60C61cWWtWHncWW
51503AM10.32211G59U60U61C62G63A64U66C67cWWtWH
52583A3A0.32461G53U54U55C56A57A58U60C61cWWtWHncWW
53612DU60.25241G952U953U954C955G956A957U959C960cWWntWH
54251J2B0.32041G954U955U956C957A958A959U961C962cWWtWHntSH
5513PYO0.56210U305U306G307G308G309A310A311G312cWWtWH
56133OVA0.49391G12U13U14C15A16A17U19C20cWWtWHncWW
57553PYO0.31741G1281U1282G1283A1284G1285A1286U1288C1289cWWtWH
58493EPH0.25191G53U54U55C56G57A58C60C61cWWtWHncWW
59191S720.51230U312U313G314G315A316A317C318A319cWWtWH
60563O580.25562U640C641U642U643G644A645A647A649cWW
61463O580.25570U194U195G196G197A198A199C200A201cWWtWH
62221J2B0.33621G954U955U956C957A958A959U961C962cWWtWHntSH
63453Q1Q0.26221G63U64U65C66G67A68U70C71cWWtWHncWW
6482DR80.43961G12U13U14C15G16A17U19C20cWWtWHncWW
65152ZNI0.47831G53U54G55A56A57A58U60C61cWWtWHncWW
66483O580.25421A1462U1463G1464A1465G1466A1467C1469U1470cWWtWH
6752ZNI0.44201G53U54G55A56A57A58U60C61cWWtWHncWW
68112QBG0.47141G1281U1282G1283A1284A1285A1286G1288C1289cWWtWH
6941S720.42811G1387U1388G1389A1390G1391A1392C1394C1395cWWtWH
70363OUY0.25121G12U13U14C15A16A17U19C20cWWtWHncWW
71683F4G0.28071G17U18G19A20A21A22U24C25cWWtWH
72673F4G0.29361G68U69G70A71A72A73U75C76cWWtWH

3D structures

Complete motif including flanking bases
SequenceCounts
GUUCAAGUC15
GUUCGAAUC10
GUUCGAUUC7
GUUCAAUUC5
GUUCAAAUC5
GUUCGAGUC4
GUUCGAUCC3
GUUCGACUC3
GUGAAAUUC2
UUGGAACA2
GUGAAACUC2
GUGAGAAUC2
CUGGAAAG2
CUGAGAUG2
AUGAGAACU1
GUGAAAAGC1
GUGAGAACC1
UUGGGAAG1
GUUCGAGCC1
GUGAGAGUC1
UUUUGUAUAA1
UCUUGAAACA1
Non-Watson-Crick part of the motif
SequenceCounts
UUCAAGU15
UUCGAAU10
UUCGAUU7
UUCAAUU5
UUCAAAU5
UUCGAGU4
UUCGAUC3
UUCGACU3
UGAGAAC2
UGGAAC2
UGAAAUU2
UGAGAAU2
UGAGAU2
UGAAACU2
UGGAAA2
UGAAAAG1
UGAGAGU1
UUCGAGC1
UUUGUAUA1
UGGGAA1
CUUGAAAC1

Release history

Release0.10.2
Date2011-12-082011-12-08
StatusNew id, no parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in HL_05993.1Only in the child motif
HL_72498.1
Compare
HL_3L0U_003, HL_2AZX_003, HL_3F4G_001, HL_3F4G_004, HL_2DU3_003, HL_3ADC_004, HL_2DER_006, HL_2D6F_006, HL_3AL0_003, HL_3ICQ_005, HL_1QU2_003, HL_2QBG_034, HL_1S72_034, HL_2CSX_003, HL_2ZJR_032, HL_2NR0_004, HL_3ADD_004, HL_2ZZN_003, HL_2FK6_002, HL_3A2K_003, HL_2CV1_006, HL_3AM1_004, HL_1WZ2_008, HL_3OUY_001, HL_2NRE_003, HL_1J1U_003, HL_3G78_001, HL_2ZZM_004, HL_2ZNI_003, HL_1J2B_004, HL_1U0B_003, HL_1J2B_002, HL_2QBG_019, HL_2DU6_003, HL_2DR8_001, HL_2BTE_008, HL_3Q1Q_011, HL_1GAX_006, HL_2AKE_003, HL_2BTE_004, HL_3OVA_001, HL_2ZM5_003HL_2D6F_003, HL_2AZX_006, HL_2ZUE_003, HL_3A3A_004, HL_2DER_003, HL_3O58_031, HL_3O58_014, HL_1S72_010, HL_3ICQ_002, HL_3ADC_008, HL_2NR0_007, HL_3ADD_008, HL_2ZZN_006, HL_2QBG_011, HL_1WZ2_004, HL_3A2K_006, HL_2CV1_003, HL_3DHS_002, HL_1O0C_003, HL_2A64_002, HL_3EPH_006, HL_2ZJR_009, HL_3O58_005, HL_3PYO_032, HL_2NR0_010, HL_2NR0_013, HL_3PYO_010, HL_2ZNI_006, HL_2NQP_004, HL_1GAX_003HL_3U5H_014, HL_3EPH_003, HL_4A1B_015, HL_3RG5_004, HL_3V2F_018, HL_4A1B_030, HL_3U5H_031, HL_3V2F_030, HL_2ZUF_003, HL_3TUP_003, HL_3AMU_003, HL_2ZJR_017, HL_4AQ7_003, HL_1QRS_003
HL_97270.1
Compare
HL_2ZJR_009, HL_1S72_010, HL_2QBG_011, HL_2A64_002, HL_3DHS_002HL_2D6F_003, HL_2AZX_006, HL_2ZUE_003, HL_3A3A_004, HL_1U0B_003, HL_2AZX_003, HL_3F4G_001, HL_2QBG_019, HL_2DU3_003, HL_2DER_003, HL_3ADC_004, HL_2DER_006, HL_3O58_014, HL_3AL0_003, HL_3ICQ_002, HL_2ZM5_003, HL_3ADC_008, HL_1QU2_003, HL_2D6F_006, HL_2QBG_034, HL_1S72_034, HL_2NR0_007, HL_2CSX_003, HL_2ZJR_032, HL_2NR0_004, HL_2AKE_003, HL_2ZZN_006, HL_3ICQ_005, HL_2ZZN_003, HL_2FK6_002, HL_1WZ2_004, HL_3A2K_006, HL_3A2K_003, HL_3Q1Q_011, HL_3AM1_004, HL_2CV1_003, HL_1WZ2_008, HL_3OUY_001, HL_1O0C_003, HL_2NRE_003, HL_3EPH_006, HL_1J1U_003, HL_3F4G_004, HL_3G78_001, HL_3O58_005, HL_2ZZM_004, HL_2CV1_006, HL_1J2B_004, HL_3PYO_032, HL_1J2B_002, HL_3ADD_008, HL_2NR0_010, HL_3L0U_003, HL_2NR0_013, HL_2DU6_003, HL_2ZNI_003, HL_3PYO_010, HL_2ZNI_006, HL_2DR8_001, HL_2NQP_004, HL_2BTE_008, HL_1GAX_003, HL_1GAX_006, HL_3ADD_004, HL_3O58_031, HL_2BTE_004, HL_3OVA_001HL_3V2F_010, HL_2GDI_002, HL_4A1B_005, HL_3U5F_006, HL_2HOJ_002, HL_2XZM_006, HL_4A1B_037, HL_1S72_039, HL_3U5H_005, HL_2GDI_004

Coloring options:

Mutual discrepancy heat map legend: