Hairpin Loop Motif Atlas Release 0.2

#	Motif	Core Nts	Instances
1	HL_69082.1 View exemplar Basepair signature: History status: > 2 parents GNRA (32) GNRA variation (2)	6	184
2	HL_05993.1 View exemplar Basepair signature: History status: Exact match T-loop with 2 stacked bulged bases (21)	8	72
3	HL_72657.1 View exemplar Basepair signature: History status: Exact match UNCG (4)	5	29
4	HL_47025.1 View exemplar Basepair signature: History status: > 2 parents GNRA variation (2)	6	25
5	HL_91122.1 View exemplar Basepair signature: History status: Exact match Pseudoknot geometry (3)	6	24
6	HL_94618.2 View exemplar Basepair signature: History status: Updated, 1 parent	4	17
7	HL_81943.1 View exemplar Basepair signature: History status: New id, 2 parents GNRA wlth tandem sheared (2)	8	15
8	HL_32207.1 View exemplar Basepair signature: History status: Exact match	7	15
9	HL_78735.2 View exemplar Basepair signature: History status: Updated, 1 parent Other HL (1) T-loop related (1)	7	12
10	HL_26075.2 View exemplar Basepair signature: History status: Updated, 1 parent U1 small nuclear ribonucleoprotein A binding hairpin (2)	6	10
11	HL_80583.1 View exemplar Basepair signature: History status: Exact match tRNA anticodon loop (3)	8	10
12	HL_83914.2 View exemplar Basepair signature: History status: Updated, 2 parents	5	10
13	HL_18082.1 View exemplar Basepair signature: History status: New id, 2 parents	5	10
14	HL_06440.1 View exemplar Basepair signature: History status: Exact match	9	8
15	HL_54401.1 View exemplar Basepair signature: History status: Exact match	7	8
16	HL_95727.2 View exemplar Basepair signature: History status: Updated, 2 parents	5	8
17	HL_58751.2 View exemplar Basepair signature: History status: Updated, 1 parent Mini UNCG (1)	3	8
18	HL_07320.2 View exemplar Basepair signature: History status: Updated, 2 parents	6	7
19	HL_95074.2 View exemplar Basepair signature: History status: Updated, 2 parents UNCG variation (3)	6	7
20	HL_68221.1 View exemplar Basepair signature: History status: Exact match	6	6
21	HL_88639.1 View exemplar Basepair signature: History status: > 2 parents GNRA (1)	6	6
22	HL_40792.1 View exemplar Basepair signature: History status: Exact match tRNA D-loop (2)	5	6
23	HL_41237.2 View exemplar Basepair signature: History status: Updated, 2 parents	6	6
24	HL_70246.1 View exemplar Basepair signature: History status: Exact match	8	6
25	HL_49433.1 View exemplar Basepair signature: History status: Exact match tRNA D-loop (2)	5	6
26	HL_77942.1 View exemplar Basepair signature: History status: Exact match	6	5
27	HL_07042.1 View exemplar Basepair signature: History status: Exact match	3	5
28	HL_31251.1 View exemplar Basepair signature: History status: Exact match GNRA (2)	6	5
29	HL_31541.1 View exemplar Basepair signature: History status: New id, 2 parents Pseudoknot geometry (1)	7	5
30	HL_54261.1 View exemplar Basepair signature: History status: New id, 2 parents	8	5
31	HL_69451.1 View exemplar Basepair signature: History status: Exact match	4	5
32	HL_20764.1 View exemplar Basepair signature: History status: Exact match tRNA D-loop (1)	6	5
33	HL_01672.1 View exemplar Basepair signature: History status: Exact match	7	5
34	HL_02975.2 View exemplar Basepair signature: History status: Updated, 1 parent	7	5
35	HL_82371.1 View exemplar Basepair signature: History status: New id, 2 parents	8	5
36	HL_29369.2 View exemplar Basepair signature: History status: Updated, 2 parents Pseudoknot geometry (2)	9	5
37	HL_03429.2 View exemplar Basepair signature: History status: Updated, 2 parents	4	5
38	HL_91907.1 View exemplar Basepair signature: History status: Exact match Purine riboswitch (2)	7	5
39	HL_06247.1 View exemplar Basepair signature: History status: Exact match	6	5
40	HL_29382.1 View exemplar Basepair signature: History status: Exact match T-loop related (1)	7	5
41	HL_96039.1 View exemplar Basepair signature: History status: Exact match	9	5
42	HL_32280.1 View exemplar Basepair signature: History status: Exact match	9	5
43	HL_03576.1 View exemplar Basepair signature: History status: Exact match	7	5
44	HL_60345.1 View exemplar Basepair signature: History status: Exact match UNCG (2)	5	5
45	HL_85352.1 View exemplar Basepair signature: History status: New id, 2 parents	5	5
46	HL_06375.1 View exemplar Basepair signature: History status: Exact match	10	4
47	HL_38227.2 View exemplar Basepair signature: History status: Updated, 2 parents	4	4
48	HL_42687.1 View exemplar Basepair signature: History status: Exact match	4	4
49	HL_83765.2 View exemplar Basepair signature: History status: Updated, 1 parent tRNA anticodon loop (1)	7	4
50	HL_52999.1 View exemplar Basepair signature: History status: Exact match	7	4
51	HL_57387.1 View exemplar Basepair signature: History status: > 2 parents	5	4
52	HL_84031.1 View exemplar Basepair signature: History status: Exact match	11	4
53	HL_62578.1 View exemplar Basepair signature: History status: Exact match	14	4
54	HL_05272.1 View exemplar Basepair signature: History status: Exact match tRNA anticodon loop with synthetase (1)	7	4
55	HL_41117.1 View exemplar Basepair signature: History status: New id, 2 parents	7	4
56	HL_20766.1 View exemplar Basepair signature: History status: Exact match	8	4
57	HL_44662.1 View exemplar Basepair signature: History status: Exact match	9	4
58	HL_36725.1 View exemplar Basepair signature: History status: Exact match Mini UNCG (1)	3	4
59	HL_32133.1 View exemplar Basepair signature: History status: Exact match tRNA D-loop (2)	5	4
60	HL_11061.2 View exemplar Basepair signature: History status: Updated, 1 parent	11	4
61	HL_22654.1 View exemplar Basepair signature: History status: Exact match	11	4
62	HL_06261.1 View exemplar Basepair signature: History status: > 2 parents	8	4
63	HL_47364.1 View exemplar Basepair signature: History status: Exact match	5	3
64	HL_86123.1 View exemplar Basepair signature: History status: Exact match T-loop with 2 stacked bulged bases (1)	9	3
65	HL_04325.1 View exemplar Basepair signature: History status: Exact match	9	3
66	HL_52890.2 View exemplar Basepair signature: History status: Updated, 2 parents tRNA D-loop (2)	6	3
67	HL_66795.1 View exemplar Basepair signature: History status: Exact match	5	3
68	HL_20010.1 View exemplar Basepair signature: History status: Exact match Mini UNCG (1)	4	3
69	HL_00293.1 View exemplar Basepair signature: History status: Exact match	5	3
70	HL_17243.1 View exemplar Basepair signature: History status: Exact match	9	3
71	HL_93985.1 View exemplar Basepair signature: History status: Exact match	8	3
72	HL_62044.1 View exemplar Basepair signature: History status: Exact match tRNA anticodon loop (1)	9	3
73	HL_75196.1 View exemplar Basepair signature: History status: Exact match	9	3
74	HL_69367.1 View exemplar Basepair signature: History status: Exact match Fab BL3-6 binding hairpin with tSW (1)	6	3
75	HL_27429.1 View exemplar Basepair signature: History status: Exact match	10	3
76	HL_44444.1 View exemplar Basepair signature: History status: Exact match Mini UNCG (1)	4	3
77	HL_58083.2 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R History status: Updated, 2 parents	9	3
78	HL_24473.2 View exemplar Basepair signature: History status: Updated, 2 parents tRNA D-loop (2)	13	3
79	HL_18213.1 View exemplar Basepair signature: History status: Exact match	8	3
80	HL_49169.1 View exemplar Basepair signature: History status: Exact match	5	3
81	HL_45018.1 View exemplar Basepair signature: History status: Exact match	10	3
82	HL_18399.1 View exemplar Basepair signature: History status: Exact match	8	3
83	HL_54834.1 View exemplar Basepair signature: History status: Exact match	8	3
84	HL_85049.2 View exemplar Basepair signature: History status: Updated, 2 parents Pseudoknot geometry (1)	5	3
85	HL_18943.1 View exemplar Basepair signature: History status: > 2 parents	5	3
86	HL_46794.1 View exemplar Basepair signature: History status: Exact match	10	3
87	HL_77652.1 View exemplar Basepair signature: History status: Exact match	6	3
88	HL_65994.1 View exemplar Basepair signature: History status: Exact match	7	3
89	HL_42580.1 View exemplar Basepair signature: History status: Exact match	6	3
90	HL_25798.1 View exemplar Basepair signature: History status: New id, 2 parents	4	2
91	HL_80492.1 View exemplar Basepair signature: History status: Exact match tRNA D-loop (1)	8	2
92	HL_19399.1 View exemplar Basepair signature: cWW-R-R-R-R-R-cSW-R-R-R-R-R-R History status: Exact match	16	2
93	HL_72964.1 View exemplar Basepair signature: History status: Exact match	11	2
94	HL_77837.1 View exemplar Basepair signature: History status: New id, 2 parents	6	2
95	HL_80557.1 View exemplar Basepair signature: History status: Exact match	7	2
96	HL_86601.1 View exemplar Basepair signature: History status: Exact match	6	2
97	HL_42884.1 View exemplar Basepair signature: History status: Exact match	5	2
98	HL_98577.1 View exemplar Basepair signature: cWW-R-R-tHW-R-R-R-R-R-R-R History status: Exact match	13	2
99	HL_48274.1 View exemplar Basepair signature: History status: Exact match T-loop related (1)	8	2
100	HL_05139.1 View exemplar Basepair signature: History status: New id, 2 parents	9	2
101	HL_27215.1 View exemplar Basepair signature: History status: New id, 2 parents	5	2
102	HL_57777.1 View exemplar Basepair signature: History status: Exact match	5	2
103	HL_00692.1 View exemplar Basepair signature: History status: Exact match	5	2
104	HL_12679.1 View exemplar Basepair signature: History status: Exact match	11	2
105	HL_88640.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match Mini UNCG (2)	6	2
106	HL_43963.1 View exemplar Basepair signature: History status: Exact match	9	2
107	HL_57904.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	2
108	HL_75914.1 View exemplar Basepair signature: History status: New id, 2 parents	5	2
109	HL_12880.1 View exemplar Basepair signature: History status: New id, 2 parents	6	2
110	HL_08706.1 View exemplar Basepair signature: History status: New id, 2 parents GNRA (1)	6	2
111	HL_31697.1 View exemplar Basepair signature: History status: Exact match	6	2
112	HL_13651.1 View exemplar Basepair signature: History status: New id, 2 parents	6	2
113	HL_89161.1 View exemplar Basepair signature: History status: Exact match	5	2
114	HL_05510.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match	9	2
115	HL_32112.1 View exemplar Basepair signature: History status: Exact match	10	2
116	HL_58311.1 View exemplar Basepair signature: History status: Exact match	10	2
117	HL_76807.1 View exemplar Basepair signature: History status: Exact match	13	2
118	HL_84487.1 View exemplar Basepair signature: History status: Exact match	5	2
119	HL_13707.1 View exemplar Basepair signature: History status: Exact match	8	2
120	HL_65376.1 View exemplar Basepair signature: History status: Exact match	6	2
121	HL_77305.1 View exemplar Basepair signature: History status: Exact match	12	2
122	HL_13798.1 View exemplar Basepair signature: History status: Exact match	10	2
123	HL_42077.1 View exemplar Basepair signature: History status: Exact match	6	2
124	HL_70609.1 View exemplar Basepair signature: History status: Exact match	6	2
125	HL_83043.1 View exemplar Basepair signature: History status: New id, 2 parents	9	2
126	HL_45746.1 View exemplar Basepair signature: History status: Exact match	7	2
127	HL_77557.1 View exemplar Basepair signature: History status: Exact match	7	2
128	HL_65924.1 View exemplar Basepair signature: cWW-cWW-R-R-tWH-R-tWH-R-R-R History status: Exact match	14	2
129	HL_55171.1 View exemplar Basepair signature: History status: New id, 2 parents tRNA anticodon loop with synthetase (1)	4	2
130	HL_38130.2 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Updated, 1 parent	11	2
131	HL_80301.1 View exemplar Basepair signature: History status: Exact match	11	2
132	HL_92124.1 View exemplar Basepair signature: History status: Exact match	10	2
133	HL_19221.1 View exemplar Basepair signature: History status: Exact match	6	2
134	HL_04298.1 View exemplar Basepair signature: History status: Exact match	10	1
135	HL_15569.1 View exemplar Basepair signature: History status: New id, 1 parent	4	1
136	HL_38138.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
137	HL_52064.1 View exemplar Basepair signature: History status: Exact match	13	1
138	HL_66291.1 View exemplar Basepair signature: History status: Exact match	8	1
139	HL_92905.1 View exemplar Basepair signature: History status: Exact match	11	1
140	HL_29962.1 View exemplar Basepair signature: History status: Exact match	12	1
141	HL_42658.1 View exemplar Basepair signature: History status: New id, 1 parent	6	1
142	HL_56663.1 View exemplar Basepair signature: History status: New id, 1 parent	11	1
143	HL_83277.1 View exemplar Basepair signature: History status: Exact match	9	1
144	HL_97499.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
145	HL_00238.1 View exemplar Basepair signature: cWW-bif-R-R-R History status: Exact match	7	1
146	HL_12468.1 View exemplar Basepair signature: History status: Exact match	3	1
147	HL_22719.1 View exemplar Basepair signature: History status: New id, 1 parent	5	1
148	HL_33524.1 View exemplar Basepair signature: cWW-R-R History status: New id, 1 parent	5	1
149	HL_61040.1 View exemplar Basepair signature: History status: New id, 1 parent	7	1
150	HL_16981.1 View exemplar Basepair signature: History status: Exact match	11	1
151	HL_93206.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
152	HL_30310.1 View exemplar Basepair signature: History status: Exact match	10	1
153	HL_57217.1 View exemplar Basepair signature: cWW-R-R-R-cSH History status: Exact match	8	1
154	HL_73827.1 View exemplar Basepair signature: History status: Exact match	16	1
155	HL_98456.1 View exemplar Basepair signature: History status: Exact match	12	1
156	HL_12532.1 View exemplar Basepair signature: History status: Exact match	5	1
157	HL_22746.1 View exemplar Basepair signature: History status: Exact match	10	1
158	HL_33640.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
159	HL_47810.1 View exemplar Basepair signature: History status: Exact match	8	1
160	HL_61061.1 View exemplar Basepair signature: cWW-cWW-tWH-tHH-R History status: Exact match	9	1
161	HL_04630.1 View exemplar Basepair signature: History status: New id, 1 parent	7	1
162	HL_26579.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	5	1
163	HL_38429.1 View exemplar Basepair signature: History status: Exact match	5	1
164	HL_06589.1 View exemplar Basepair signature: History status: Exact match	12	1
165	HL_20143.1 View exemplar Basepair signature: History status: Exact match	11	1
166	HL_30429.1 View exemplar Basepair signature: History status: Exact match	7	1
167	HL_75141.1 View exemplar Basepair signature: History status: Exact match	7	1
168	HL_00570.1 View exemplar Basepair signature: History status: Exact match	10	1
169	HL_12650.1 View exemplar Basepair signature: History status: New id, 1 parent	13	1
170	HL_22931.1 View exemplar Basepair signature: History status: Exact match	6	1
171	HL_35330.1 View exemplar Basepair signature: History status: Exact match	9	1
172	HL_77981.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-R-R-R-R-R-R-R History status: Exact match	14	1
173	HL_17468.1 View exemplar Basepair signature: cWW-tSH-R History status: Exact match	5	1
174	HL_53789.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
175	HL_80822.1 View exemplar Basepair signature: History status: Exact match	7	1
176	HL_94145.1 View exemplar Basepair signature: cWW-cWW-tWW-R-R-R-R History status: Exact match	10	1
177	HL_20252.1 View exemplar Basepair signature: cWW-cWS-R-R-R History status: Exact match tRNA D-loop (1)	7	1
178	HL_43598.1 View exemplar Basepair signature: History status: Exact match tRNA D-loop (1)	10	1
179	HL_99458.1 View exemplar Basepair signature: History status: Exact match	6	1
180	HL_23141.1 View exemplar Basepair signature: History status: Exact match	11	1
181	HL_35758.1 View exemplar Basepair signature: History status: Exact match	19	1
182	HL_48426.1 View exemplar Basepair signature: History status: Exact match	7	1
183	HL_78191.1 View exemplar Basepair signature: History status: New id, 1 parent	8	1
184	HL_05228.1 View exemplar Basepair signature: History status: Exact match	5	1
185	HL_17951.1 View exemplar Basepair signature: History status: Exact match	5	1
186	HL_27237.1 View exemplar Basepair signature: History status: Exact match	4	1
187	HL_40866.1 View exemplar Basepair signature: History status: Exact match	5	1
188	HL_54040.1 View exemplar Basepair signature: History status: Exact match	10	1
189	HL_80843.1 View exemplar Basepair signature: History status: Exact match	9	1
190	HL_20316.1 View exemplar Basepair signature: History status: Exact match	7	1
191	HL_84126.1 View exemplar Basepair signature: History status: Exact match	8	1
192	HL_01504.1 View exemplar Basepair signature: History status: Exact match	12	1
193	HL_24282.1 View exemplar Basepair signature: History status: Exact match	8	1
194	HL_36211.1 View exemplar Basepair signature: History status: Exact match	8	1
195	HL_48480.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
196	HL_62590.1 View exemplar Basepair signature: History status: Exact match	9	1
197	HL_78507.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
198	HL_88921.1 View exemplar Basepair signature: cWW-R-cWS-R-R History status: Exact match	8	1
199	HL_76027.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
200	HL_84289.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R History status: Exact match	11	1
201	HL_36252.1 View exemplar Basepair signature: History status: Exact match	4	1
202	HL_49035.1 View exemplar Basepair signature: History status: New id, 1 parent	5	1
203	HL_63690.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match	9	1
204	HL_27541.1 View exemplar Basepair signature: History status: Exact match	6	1
205	HL_54304.1 View exemplar Basepair signature: History status: Exact match	8	1
206	HL_70011.1 View exemplar Basepair signature: History status: Exact match	10	1
207	HL_81949.1 View exemplar Basepair signature: History status: Exact match	5	1
208	HL_95197.1 View exemplar Basepair signature: History status: Exact match	11	1
209	HL_10523.1 View exemplar Basepair signature: History status: Exact match	4	1
210	HL_24618.1 View exemplar Basepair signature: History status: Exact match	11	1
211	HL_79390.1 View exemplar Basepair signature: cWW-cWS-R History status: Exact match tRNA D-loop (1)	5	1
212	HL_90365.1 View exemplar Basepair signature: cWW-R-R-R-tSH-R-R-R-R-R-R-R-R History status: Exact match	16	1
213	HL_18288.1 View exemplar Basepair signature: History status: Exact match	7	1
214	HL_29052.1 View exemplar Basepair signature: History status: Exact match Pseudoknot (1)	7	1
215	HL_41493.1 View exemplar Basepair signature: History status: Exact match	7	1
216	HL_95472.1 View exemplar Basepair signature: History status: Exact match	7	1
217	HL_10842.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
218	HL_20806.1 View exemplar Basepair signature: cWW-R-R-R-R-cHH-R-R History status: Exact match	11	1
219	HL_58556.1 View exemplar Basepair signature: History status: Exact match	8	1
220	HL_84888.1 View exemplar Basepair signature: cWW-cWW-R-tSH-R-R History status: Exact match	9	1
221	HL_03228.1 View exemplar Basepair signature: History status: Exact match	6	1
222	HL_24707.1 View exemplar Basepair signature: cWW-cWS History status: Exact match	4	1
223	HL_37522.1 View exemplar Basepair signature: History status: Exact match	8	1
224	HL_65802.1 View exemplar Basepair signature: cWW-tSH-tHH-R-R-R-R-R History status: Exact match	11	1
225	HL_79880.1 View exemplar Basepair signature: History status: Exact match	12	1
226	HL_06089.1 View exemplar Basepair signature: History status: Exact match	7	1
227	HL_20914.1 View exemplar Basepair signature: cWW-L-R-cWW-R-R-R-R-R-R-R-R-R-R History status: Exact match	17	1
228	HL_14467.1 View exemplar Basepair signature: History status: Exact match	3	1
229	HL_25195.1 View exemplar Basepair signature: cWW-cWH-R-R-R-R-R-R-R History status: Exact match	12	1
230	HL_37768.1 View exemplar Basepair signature: History status: Exact match	4	1
231	HL_50137.1 View exemplar Basepair signature: History status: Exact match tRNA anticodon loop (1)	9	1
232	HL_79902.1 View exemplar Basepair signature: cWW-tSH-tHS-R-R History status: Exact match	8	1
233	HL_42437.1 View exemplar Basepair signature: History status: Exact match	6	1
234	HL_72210.1 View exemplar Basepair signature: History status: Exact match	6	1
235	HL_83053.1 View exemplar Basepair signature: cWW-cWW-tWW-R-R-R-R-R History status: Exact match	11	1
236	HL_12139.1 View exemplar Basepair signature: History status: Exact match	5	1
237	HL_59610.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
238	HL_85273.1 View exemplar Basepair signature: History status: Exact match	8	1
239	HL_14885.1 View exemplar Basepair signature: History status: Exact match	11	1
240	HL_25197.1 View exemplar Basepair signature: cWW-tSH-tSH-bif-R-R-R-R-R-R-R History status: Exact match	15	1
241	HL_51930.1 View exemplar Basepair signature: History status: Exact match	10	1
242	HL_29503.1 View exemplar Basepair signature: History status: New id, 1 parent	6	1
243	HL_55766.1 View exemplar Basepair signature: History status: Exact match	6	1
244	HL_83094.1 View exemplar Basepair signature: History status: New id, 1 parent	6	1
245	HL_96740.1 View exemplar Basepair signature: History status: New id, 1 parent	4	1
246	HL_00194.1 View exemplar Basepair signature: History status: Exact match	10	1
247	HL_12242.1 View exemplar Basepair signature: History status: Exact match	8	1
248	HL_22711.1 View exemplar Basepair signature: History status: New id, 1 parent	12	1
249	HL_32622.1 View exemplar Basepair signature: History status: Exact match	8	1
250	HL_77783.1 View exemplar Basepair signature: History status: Exact match	9	1

Coloring options:
Nucleotide numbers

Exact match 199; Updated, 1 parent 8; Updated, 2 parents 12; New id, 1 parent 14; New id, 2 parents 17; > 2 parents 6;

Hairpin Loop Motif Atlas Release 0.2 Download CSV JSON annotations

Hairpin Loop Motif Atlas Release 0.2

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