Motif IL_18835.1 Version IL_18835.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-5 | 1-6 | 2-4 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 3J79 | 0.7104 | 5 | A | LSU rRNA | G | 1530 | U | 1533 | U | 1534 | * | A | 1569 | U | 1572 | C | 1574 | cWW | cWW | ||||
| 2 | ➜ | 5AN9 | 0.7131 | 6 | N | LSU rRNA | C | 1247 | A | 1250 | G | 1251 | * | U | 1229 | G | 1233 | G | 1235 | cWW | ntHS | cWW | |||
| 3 | ➜ | 3J7P | 0.3514 | 4 | S2 | SSU rRNA | G | 1727 | U | 1730 | A | 1731 | * | U | 1803 | G | 1805 | C | 1807 | cWW | cWW | ||||
| 4 | ➜ | 4V88 | 0.2884 | 4 | A6 | SSU rRNA | C | 708 | U | 711 | G | 712 | * | C | 726 | U | 728 | G | 730 | cWW | cWW | ||||
| 5 | ➜ | 3J7A | 0.0000 | 4 | A | SSU rRNA | C | 1979 | G | 1982 | A | 1983 | * | U | 2007 | C | 2009 | G | 2011 | cWW | cWW | ||||
| 6 | ➜ | 3J79 | 0.2870 | 4 | A | LSU rRNA | C | 2069 | U | 2072 | G | 2073 | * | C | 2036 | U | 2038 | G | 2040 | cWW | ncWW | cWW | |||
| 7 | ➜ | 5AJ0 | 0.3781 | 4 | A2 | LSU rRNA | U | 682 | C | 685 | C | 686 | * | G | 456 | G | 458 | A | 460 | cWW | cWW | ||||
| 8 | ➜ | 5BTM | 0.3917 | 4 | A | RNA (55-mer) | U | 10 | U | 13 | A | 14 | * | U | 42 | C | 44 | A | 46 | cWW | cWW | ||||
| 9 | ➜ | 4BTS | 0.4395 | 4 | DA | SSU rRNA | G | 863 | U | 866 | U | 867 | * | A | 901 | G | 903 | C | 905 | cWW | cWW | ||||
| 10 | ➜ | 3J7P | 0.4133 | 4 | S2 | SSU rRNA | G | 1010 | U | 1013 | G | 1014 | * | C | 927 | G | 929 | C | 931 | cWW | ncWW | cWW | |||
| 11 | ➜ | 1D4R | 0.6576 | 6 | C | 29-MER OF MODIFIED SRP RNA HELIX 6 | G | 12 | A | 15 | C | 17 | * | G | 12||||6_555 | A | 15||||6_555 | C | 17||||6_555 | cWW | cWW | ||||
| 12 | ➜ | 3J7P | 0.9757 | 5 | S2 | SSU rRNA | U | 1202 | A | 1204 | G | 1206 | * | U | 1692 | C | 1696 | A | 1697 | ncWW | ncWW | cWW | |||
| 13 | ➜ | 3JCS | 0.8080 | 4 | 2+1 | LSU rRNA | C | 4 | A | 6 | U | 8 | * | A | 1776 | U | 1779 | G | 1780 | cWW | ncWW | cWW | |||
| 14 | ➜ | 5AJ0 | 0.7728 | 5 | A2 | LSU rRNA | C | 1068 | A | 1070 | G | 1072 | * | C | 1189 | C | 1193 | G | 1194 | cWW | cWW | ||||
| 15 | ➜ | 4V91 | 0.8862 | 4 | 1 | LSU rRNA | G | 3345 | A | 3347 | C | 3349 | * | G | 3356 | A | 3359 | C | 3360 | cWW | cWW | ||||
| 16 | ➜ | 3J7P | 0.8128 | 5 | 5 | LSU rRNA | C | 4996 | G | 4998 | G | 5000 | * | C | 5050 | U | 5053 | G | 5055 | ncWW | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGACG*UGUACA | 1 |
| GGGAGC*GGGAGC | 1 |
| GAAUG*CGGCC | 1 |
| CAACU*AUGUG | 1 |
| CCACG*CCGUCG | 1 |
| CGGGG*CCCUCG | 1 |
| GUAGC*GUUAC | 1 |
| GUAUU*AGGAC | 1 |
| UUCUA*UUCUA | 1 |
| GUUUA*UUGAC | 1 |
| CUCAG*UUUCGGG | 1 |
| CCUUG*CUUGG | 1 |
| CAAGA*UUCUG | 1 |
| UUUCC*GAGGA | 1 |
| CUUUG*CUUUG | 1 |
| GGUUU*AUCUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAC*GUAC | 1 |
| GGAG*GGAG | 1 |
| AAU*GGC | 1 |
| AAC*UGU | 1 |
| CAC*CGUC | 1 |
| GGG*CCUC | 1 |
| UAG*UUA | 1 |
| UAU*GGA | 1 |
| UCU*UCU | 1 |
| UUU*UGA | 1 |
| UCA*UUCGG | 1 |
| CUU*UUG | 1 |
| AAG*UCU | 1 |
| UUC*AGG | 1 |
| UUU*UUU | 1 |
| GUU*UCUC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-R-tSH-tWH-tHW-L-R-cWW-cWW
- Heat map statistics
- Min 0.27 | Avg 0.66 | Max 1.14
Coloring options: