Motif IL_19883.1 Version IL_19883.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-8 | 5-9 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V91_056 | 4V91 | 0.1147 | 4 | 1 | LSU rRNA | C | 1187 | U | 1188 | C | 1189 | A | 1190 | A | 1193 | G | 1194 | * | C | 1314 | U | 1315 | A | 1317 | G | 1319 | cWW | tWW | ntWW | ntWH | cWW |
| 2 | IL_3J79_051 | 3J79 | 0.0000 | 4 | A | LSU rRNA | C | 1315 | U | 1316 | C | 1317 | A | 1318 | A | 1321 | G | 1322 | * | C | 1442 | U | 1443 | A | 1445 | G | 1447 | cWW | tWW | tWW | ntWH | cWW |
| 3 | IL_4V88_297 | 4V88 | 0.1246 | 4 | A5 | LSU rRNA | C | 1187 | U | 1188 | C | 1189 | A | 1190 | A | 1193 | G | 1194 | * | C | 1314 | U | 1315 | A | 1317 | G | 1319 | cWW | tWW | tWW | ncWB | cWW |
| 4 | IL_5AJ0_085 | 5AJ0 | 0.3525 | 4 | A2 | LSU rRNA | C | 1907 | U | 1908 | C | 1909 | A | 1910 | A | 1913 | G | 1914 | * | C | 2034 | U | 2035 | G | 2037 | G | 2039 | cWW | tWW | cWW | ||
| 5 | IL_4V8P_359 | 4V8P | 0.4241 | 4 | F1 | LSU rRNA | C | 1214 | U | 1215 | C | 1216 | A | 1217 | A | 1220 | G | 1221 | * | C | 1341 | U | 1342 | A | 1344 | G | 1346 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCAUCAG*CUCAAG | 2 |
| CUCAUGAG*CUAAAG | 1 |
| CUCAUCAG*CUGGAG | 1 |
| CUCAUCAG*CUGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAUCA*UCAA | 2 |
| UCAUGA*UAAA | 1 |
| UCAUCA*UGGA | 1 |
| UCAUCA*UGAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-tWW-L-tWW-tWH-cWW
- Heat map statistics
- Min 0.11 | Avg 0.24 | Max 0.44
Coloring options: