Motif IL_19883.1 Version IL_19883.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10	1-10	2-9	4-8	5-7	5-9	6-7	6-9
1	IL_4V91_056➜	4V91	0.1147	4		1	LSU rRNA	C	1187	U	1188	C	1189	A	1190	A	1193	G	1194	*	C	1314	U	1315	A	1317	G	1319	cWW	tWW	ntWW	ntHW	ntWH	cWW	ntSH
2	IL_3J79_051➜	3J79	0.0000	4		A	LSU rRNA	C	1315	U	1316	C	1317	A	1318	A	1321	G	1322	*	C	1442	U	1443	A	1445	G	1447	cWW	tWW	tWW	ntHW	tWH	cWW	ntSH
3	IL_4V88_297➜	4V88	0.1246	4		A5	LSU rRNA	C	1187	U	1188	C	1189	A	1190	A	1193	G	1194	*	C	1314	U	1315	A	1317	G	1319	cWW	tWW	tWW		ntWH	cWW	ntSH
4	IL_5AJ0_085➜	5AJ0	0.3525	4		A2	LSU rRNA	C	1907	U	1908	C	1909	A	1910	A	1913	G	1914	*	C	2034	U	2035	G	2037	G	2039	cWW	ncWW	tWW	ntHW		cWW
5	IL_4V8P_359➜	4V8P	0.4241	4		F1	LSU rRNA	C	1214	U	1215	C	1216	A	1217	A	1220	G	1221	*	C	1341	U	1342	A	1344	G	1346	cWW	ntSH	ntHW	ntHW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCAUCAG*CUCAAG	2
CUCAUCAG*CUGAAG	1
CUCAUGAG*CUAAAG	1
CUCAUCAG*CUGGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCAUCA*UCAA	2
UCAUCA*UGAA	1
UCAUGA*UAAA	1
UCAUCA*UGGA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations
Basepair signature: cWW-tWW-L-tWW-tWH-cWW
Heat map statistics: Min 0.11 | Avg 0.24 | Max 0.44

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Coloring options: Nucleotide numbers

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