Equivalence class NR_1.5_74924.19 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3PEY|1|B (rep) | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | S. cerevisiae Dbp5 bound to RNA and ADP BeF3 | X-ray diffraction | 1.4 | 2011-03-23 | ||||
| 2 | 3PEW|1|B | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3 | X-ray diffraction | 1.5 | 2011-03-23 | ||||
| 3 | 4ALP|1|E | HEXA URIDINE | synthetic construct | Synthetic | The Lin28b Cold shock domain in complex with hexauridine | X-ray diffraction | 1.48 | 2012-09-05 | ||
| 4 | 5SZE|1|C | RNA (5'-R(P*UP*UP*U)-3') | unidentified | Crystal structure of Aquifex aeolicus Hfq-RNA complex at 1.5A | X-ray diffraction | 1.5 | 2017-04-12 | |||
| 5 | 7SOW|1|B | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | synthetic construct | Synthetic | LaM domain of human LARP1 in complex with UUUUUU | X-ray diffraction | 1.3 | 2022-11-09 |
Release history
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5SZE|1|C | Crystal structure of Aquifex aeolicus Hfq-RNA complex at 1.5A | X-RAY DIFFRACTION | 1.5 | 3 |
| 2 | 3PEW|1|B | S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3 | X-RAY DIFFRACTION | 1.5 | 6 |
| 3 | 3PEY|1|B | S. cerevisiae Dbp5 bound to RNA and ADP BeF3 | X-RAY DIFFRACTION | 1.4 | 6 |
| 4 | 7SOW|1|B | LaM domain of human LARP1 in complex with UUUUUU | X-RAY DIFFRACTION | 1.3 | 4 |
| 5 | 4ALP|1|E | The Lin28b Cold shock domain in complex with hexauridine | X-RAY DIFFRACTION | 1.48 | 6 |