Equivalence class NR_2.0_01949.5 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5UED|1|A+ 5UED|1|B (rep) | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')G | X-ray diffraction | 1.5 | 2017-07-05 | |||
| 2 | 6C8J|1|A+ 6C8J|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA-activated 2-AIpG monomer complex, 15 min soaking | X-ray diffraction | 1.5 | 2018-05-30 | |||
| 3 | 7KUP|1|A+ 7KUP|1|B | 5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(OMG))-3' | synthetic construct | 2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-ray diffraction | 1.44 | 2021-09-08 | |||
| 4 | 7KUK|1|A+ 7KUK|1|B | RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | High resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-ray diffraction | 1.67 | 2021-09-08 | |||
| 5 | 7KUM|1|A+ 7KUM|1|B | 5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(LCG)-3' | synthetic construct | LNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-ray diffraction | 1.714 | 2021-09-08 | |||
| 6 | 8SWG|1|A+ 8SWG|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G*(GA3))-3') | synthetic construct | RNA duplex bound with GpppA dinucleotide ligand | X-ray diffraction | 1.5 | 2023-05-31 | |||
| 7 | 7KUL|1|A+ 7KUL|1|B | DNA/RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-D(P*G)-3') | synthetic construct | DNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-ray diffraction | 1.64 | 2021-09-08 | |||
| 8 | 6C8D|1|A+ 6C8D|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA-dGMP complex with Mg ion | X-ray diffraction | 1.92 | 2018-05-30 | |||
| 9 | 6C8I|1|A+ 6C8I|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA-activated 2-AIpG monomer complex, 5 min soaking | X-ray diffraction | 1.77 | 2018-05-30 | |||
| 10 | 5UEE|1|A+ 5UEE|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-ray diffraction | 1.9 | 2017-07-05 | |||
| 11 | 6C8E|1|A+ 6C8E|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | RNA-imidazolium-bridged intermediate complex, 4h soaking | X-ray diffraction | 1.8 | 2018-05-30 | |||
| 12 | 6OWL|1|A | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*R)-3') | synthetic construct | RNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMP | X-ray diffraction | 2 | 2020-02-26 |
Release history
| Release | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.0_01949.5 | NR_2.0_01949.4 | 3.285 | (11) 7KUP|1|A+7KUP|1|B, 7KUM|1|A+7KUM|1|B, 7KUL|1|A+7KUL|1|B, 7KUK|1|A+7KUK|1|B, 6OWL|1|A, 6C8J|1|A+6C8J|1|B, 6C8I|1|A+6C8I|1|B, 6C8E|1|A+6C8E|1|B, 6C8D|1|A+6C8D|1|B, 5UEE|1|A+5UEE|1|B, 5UED|1|A+5UED|1|B | (1) 8SWG|1|A+8SWG|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6C8D|1|A+6C8D|1|B | RNA-dGMP complex with Mg ion | X-RAY DIFFRACTION | 1.92 | 10 |
| 2 | 6C8J|1|A+6C8J|1|B | RNA-activated 2-AIpG monomer complex, 15 min soaking | X-RAY DIFFRACTION | 1.5 | 10 |
| 3 | 7KUL|1|A+7KUL|1|B | DNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-RAY DIFFRACTION | 1.64 | 9 |
| 4 | 6C8E|1|A+6C8E|1|B | RNA-imidazolium-bridged intermediate complex, 4h soaking | X-RAY DIFFRACTION | 1.8 | 10 |
| 5 | 7KUP|1|A+7KUP|1|B | 2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-RAY DIFFRACTION | 1.44 | 9 |
| 6 | 7KUK|1|A+7KUK|1|B | High resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-RAY DIFFRACTION | 1.67 | 10 |
| 7 | 7KUM|1|A+7KUM|1|B | LNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-RAY DIFFRACTION | 1.714 | 9 |
| 8 | 5UEE|1|A+5UEE|1|B | RNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-RAY DIFFRACTION | 1.9 | 11 |
| 9 | 5UED|1|A+5UED|1|B | RNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')G | X-RAY DIFFRACTION | 1.5 | 11 |
| 10 | 6C8I|1|A+6C8I|1|B | RNA-activated 2-AIpG monomer complex, 5 min soaking | X-RAY DIFFRACTION | 1.77 | 10 |
| 11 | 8SWG|1|A+8SWG|1|B | RNA duplex bound with GpppA dinucleotide ligand | X-RAY DIFFRACTION | 1.5 | 10 |
| 12 | 6OWL|1|A | RNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMP | X-RAY DIFFRACTION | 2 | 9 |