Equivalence class NR_2.5_28129.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8AZW|1|A+ 8AZW|1|B (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Nicotiana tabacum | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the plant 60S subunit | Electron microscopy | 2.14 | 2023-06-07 |
| 2 | 7QIW|1|2+ 7QIW|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Solanum lycopersicum | Eukarya | RF02543 + RF00002 | Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit. | Electron microscopy | 2.35 | 2022-07-13 |
| 3 | 7QIZ|1|2+ 7QIZ|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Solanum lycopersicum | Eukarya | RF02543 + RF00002 | Specific features and methylation sites of a plant 80S ribosome | Electron microscopy | 2.38 | 2022-08-03 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_28129.2 | NR_2.5_28129.1 | 3.286 | (2) 7QIZ|1|2+7QIZ|1|8, 7QIW|1|2+7QIW|1|8 | (1) 8AZW|1|A+8AZW|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.5_28129.2 | NR_2.5_28129.3 | 3.297 | (3) 8AZW|1|A+8AZW|1|B, 7QIZ|1|2+7QIZ|1|8, 7QIW|1|2+7QIW|1|8 | (0) | (1) 8B2L|1|A3+8B2L|1|B3 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7QIW|1|2+7QIW|1|8 | Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit. | ELECTRON MICROSCOPY | 2.35 | 2975 |
| 2 | 7QIZ|1|2+7QIZ|1|8 | Specific features and methylation sites of a plant 80S ribosome | ELECTRON MICROSCOPY | 2.38 | 2975 |
| 3 | 8AZW|1|A+8AZW|1|B | Cryo-EM structure of the plant 60S subunit | ELECTRON MICROSCOPY | 2.14 | 3066 |