Equivalence class NR_20.0_37403.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8SYI|1|R (rep) | RNA (5'-R(P*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Cyanobacterial RNAP-EC | Electron microscopy | 2.94 | 2023-07-05 | |||
| 2 | 8EOS|1|R | RNA (5'-R(P*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | M. tuberculosis RNAP elongation complex with NusG and CMPCPP | Electron microscopy | 3.1 | 2023-02-01 | |||
| 3 | 8EOT|1|R | RNA (5'-R(P*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | M. tuberculosis RNAP elongation complex with NusG | Electron microscopy | 3.3 | 2023-02-01 | |||
| 4 | 8E95|1|R | RNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Mycobacterium tuberculosis RNAP elongation complex | Electron microscopy | 2.9 | 2023-03-22 | |||
| 5 | 6J9E|1|I | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 | Electron microscopy | 3.41 | 2019-07-17 | |||
| 6 | 8E82|1|R | RNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Mycobacterium tuberculosis RNAP elongation complex with NusG transcription factor | Electron microscopy | 3.03 | 2023-03-22 | |||
| 7 | 6M6C|1|R | RNA | Thermus thermophilus | CryoEM structure of Thermus thermophilus RNA polymerase elongation complex | Electron microscopy | 3.1 | 2020-10-14 | |||
| 8 | 6X50|1|R | RNA (20-mer) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - V state | Electron microscopy | 3.3 | 2021-02-03 | |||
| 9 | 6C6T|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | Electron microscopy | 3.5 | 2018-07-25 | |||
| 10 | 6J9F|1|I | RNA (5'-R(P*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 | Electron microscopy | 3.95 | 2019-07-17 | |||
| 11 | 6X4Y|1|R | RNA (20-mer) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - IV state | Electron microscopy | 3.6 | 2021-02-03 | |||
| 12 | 6X43|1|R | RNA (20-mer) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - II state | Electron microscopy | 3.6 | 2021-02-03 | |||
| 13 | 6C6U|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | Electron microscopy | 3.7 | 2018-07-25 | |||
| 14 | 6C6S|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | Electron microscopy | 3.7 | 2018-07-25 | |||
| 15 | 6X4W|1|R | RNA (20-mer) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - III state | Electron microscopy | 3.8 | 2021-02-03 | |||
| 16 | 6X2N|1|R | RNA (20-MER) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - I state | Electron microscopy | 3.9 | 2021-02-03 | |||
| 17 | 6X2F|1|R | RNA (20-MER) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - L2 state | Electron microscopy | 4 | 2021-02-03 | |||
| 18 | 6X26|1|R | RNA (20-MER) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - L1 state | Electron microscopy | 4.1 | 2021-02-03 | |||
| 19 | 6ALH|1|R | RNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia virus T7 | CryoEM structure of E.coli RNA polymerase elongation complex | Electron microscopy | 4.4 | 2017-08-16 |
Release history
| Release | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_37403.4 | NR_20.0_37403.3 | 3.290 | (18) 6J9E|1|I, 6C6U|1|R, 6C6T|1|R, 6C6S|1|R, 6ALH|1|R, 8EOT|1|R, 8EOS|1|R, 8E95|1|R, 8E82|1|R, 6X50|1|R, 6X4Y|1|R, 6X4W|1|R, 6X43|1|R, 6X2N|1|R, 6X2F|1|R, 6X26|1|R, 6M6C|1|R, 6J9F|1|I | (1) 8SYI|1|R | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8E95|1|R | Mycobacterium tuberculosis RNAP elongation complex | ELECTRON MICROSCOPY | 2.9 | 10 |
| 2 | 8E82|1|R | Mycobacterium tuberculosis RNAP elongation complex with NusG transcription factor | ELECTRON MICROSCOPY | 3.03 | 10 |
| 3 | 6X2F|1|R | Mfd-bound E.coli RNA polymerase elongation complex - L2 state | ELECTRON MICROSCOPY | 4 | 9 |
| 4 | 6M6C|1|R | CryoEM structure of Thermus thermophilus RNA polymerase elongation complex | ELECTRON MICROSCOPY | 3.1 | 10 |
| 5 | 6C6S|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.7 | 10 |
| 6 | 6C6T|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.5 | 10 |
| 7 | 6C6U|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | ELECTRON MICROSCOPY | 3.7 | 10 |
| 8 | 6X50|1|R | Mfd-bound E.coli RNA polymerase elongation complex - V state | ELECTRON MICROSCOPY | 3.3 | 9 |
| 9 | 6X2N|1|R | Mfd-bound E.coli RNA polymerase elongation complex - I state | ELECTRON MICROSCOPY | 3.9 | 9 |
| 10 | 6X43|1|R | Mfd-bound E.coli RNA polymerase elongation complex - II state | ELECTRON MICROSCOPY | 3.6 | 10 |
| 11 | 6X26|1|R | Mfd-bound E.coli RNA polymerase elongation complex - L1 state | ELECTRON MICROSCOPY | 4.1 | 9 |
| 12 | 6ALH|1|R | CryoEM structure of E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 4.4 | 10 |
| 13 | 8SYI|1|R | Cyanobacterial RNAP-EC | ELECTRON MICROSCOPY | 2.94 | 17 |
| 14 | 6J9F|1|I | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.95 | 12 |
| 15 | 6J9E|1|I | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.41 | 12 |
| 16 | 6X4W|1|R | Mfd-bound E.coli RNA polymerase elongation complex - III state | ELECTRON MICROSCOPY | 3.8 | 9 |
| 17 | 6X4Y|1|R | Mfd-bound E.coli RNA polymerase elongation complex - IV state | ELECTRON MICROSCOPY | 3.6 | 10 |
| 18 | 8EOS|1|R | M. tuberculosis RNAP elongation complex with NusG and CMPCPP | ELECTRON MICROSCOPY | 3.1 | 13 |
| 19 | 8EOT|1|R | M. tuberculosis RNAP elongation complex with NusG | ELECTRON MICROSCOPY | 3.3 | 13 |