BGSU RNA Site //

Equivalence class NR_20.0_56633.5 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
17OIZ|1|V (rep)Transfer RNAtRNA, mRNAEscherichia coli K-12BacteriaRF00005Cryo-EM structure of 70S ribosome stalled with TnaC peptideElectron microscopy2.92021-09-15
26I0Y|1|VTransfer RNAProline tRNAEscherichia coliBacteriaRF00005TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnelElectron microscopy3.22018-12-05
37OJ0|1|VTransfer RNAtRNA, mRNAEscherichia coli K-12BacteriaRF00005Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2Electron microscopy3.52021-09-15
43JBU|1|vTransfer RNAglycine-tRNAEscherichia coliBacteriaRF00005Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.642016-01-27
54UY8|1|VTransfer RNARNAEscherichia coliBacteriaRF00005Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosomeElectron microscopy3.82014-10-29
65NP6|1|BTransfer RNAP-site tRNA-Gly, mRNAEscherichia coliBacteriaRF0000570S structure prior to bypassingElectron microscopy3.62017-06-14
74V5H|1|AVTransfer RNAP-SITE TRNA, MRNAEscherichia coliBacteriaRF00005E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.Electron microscopy5.82014-07-09
84V6M|1|AVTransfer RNAFtsQ nascent chain, mRNAEscherichia coliBacteriaRF00005Structure of the ribosome-SecYE complex in the membrane environmentElectron microscopy7.12014-07-09

Release history

Release3.1963.1973.1983.1993.2003.201
Date2021-09-152021-09-222021-09-292021-10-062021-10-132021-10-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_56633.5NR_20.0_56633.43.196(6) 6I0Y|1|V, 5NP6|1|B, 4V6M|1|AV, 4V5H|1|AV, 4UY8|1|V, 3JBU|1|v(2) 7OJ0|1|V, 7OIZ|1|V(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_56633.5NR_20.0_56633.63.202(8) 5NP6|1|B, 4V6M|1|AV, 4V5H|1|AV, 4UY8|1|V, 3JBU|1|v, 7OJ0|1|V, 7OIZ|1|V, 6I0Y|1|V(0) (1) 7P3K|1|V

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V5H|1|AVE.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.ELECTRON MICROSCOPY5.876
24UY8|1|VMolecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosomeELECTRON MICROSCOPY3.876
36I0Y|1|VTnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnelELECTRON MICROSCOPY3.277
44V6M|1|AVStructure of the ribosome-SecYE complex in the membrane environmentELECTRON MICROSCOPY7.177
57OIZ|1|VCryo-EM structure of 70S ribosome stalled with TnaC peptideELECTRON MICROSCOPY2.974
67OJ0|1|VCryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2ELECTRON MICROSCOPY3.574
75NP6|1|B70S structure prior to bypassingELECTRON MICROSCOPY3.676
83JBU|1|vMechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.6476