Equivalence class NR_3.5_08692.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2NZ4|1|Q (rep) | GlmS ribozyme, substrate strand RNA 13-mer | Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-ray diffraction | 2.5 | 140 | 2007-01-16 | ||||
| 2 | 3G9C|1|S | GLMS RIBOZYME, RNA (5'-R(*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Crystal structure of the product Bacillus anthracis glmS ribozyme | X-ray diffraction | 2.9 | 139 | 2009-11-03 | |||
| 3 | 3G96|1|Q | GLMS RIBOZYME, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P | X-ray diffraction | 3.01 | 140 | 2009-11-03 | |||
| 4 | 2NZ4|1|R | GlmS ribozyme, substrate strand RNA 13-mer | Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-ray diffraction | 2.5 | 140 | 2007-01-16 | ||||
| 5 | 3L3C|1|R | GLMS RIBOZYME, RNA (5'-R(*AP*(A2M)*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P | X-ray diffraction | 2.85 | 140 | 2009-12-29 | ||||
| 6 | 3L3C|1|Q | GLMS RIBOZYME, RNA (5'-R(*AP*(A2M)*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P | X-ray diffraction | 2.85 | 140 | 2009-12-29 | ||||
| 7 | 3G96|1|R | GLMS RIBOZYME, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P | X-ray diffraction | 3.01 | 140 | 2009-11-03 | |||
| 8 | 3G8T|1|P | glmS glucosamine-6-phosphate activated ribozyme, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-ray diffraction | 3 | 140 | 2009-11-03 | |||
| 9 | 3G8S|1|R | GLMS RIBOZYME, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme | X-ray diffraction | 3.1 | 140 | 2009-11-03 | ||||
| 10 | 2NZ4|1|P | GlmS ribozyme, substrate strand RNA 13-mer | Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-ray diffraction | 2.5 | 140 | 2007-01-16 | ||||
| 11 | 3G8T|1|R | glmS glucosamine-6-phosphate activated ribozyme, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-ray diffraction | 3 | 140 | 2009-11-03 | |||
| 12 | 3G9C|1|Q | GLMS RIBOZYME, RNA (5'-R(*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Crystal structure of the product Bacillus anthracis glmS ribozyme | X-ray diffraction | 2.9 | 140 | 2009-11-03 | |||
| 13 | 3G96|1|S | GLMS RIBOZYME, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P | X-ray diffraction | 3.01 | 140 | 2009-11-03 | |||
| 14 | 3G96|1|P | GLMS RIBOZYME, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P | X-ray diffraction | 3.01 | 140 | 2009-11-03 | |||
| 15 | 3G8T|1|Q | glmS glucosamine-6-phosphate activated ribozyme, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-ray diffraction | 3 | 140 | 2009-11-03 | |||
| 16 | 3L3C|1|P | GLMS RIBOZYME, RNA (5'-R(*AP*(A2M)*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P | X-ray diffraction | 2.85 | 140 | 2009-12-29 | ||||
| 17 | 3G8S|1|Q | GLMS RIBOZYME, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme | X-ray diffraction | 3.1 | 140 | 2009-11-03 | ||||
| 18 | 2NZ4|1|S | GlmS ribozyme, substrate strand RNA 13-mer | Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-ray diffraction | 2.5 | 140 | 2007-01-16 | ||||
| 19 | 3G9C|1|P | GLMS RIBOZYME, RNA (5'-R(*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Crystal structure of the product Bacillus anthracis glmS ribozyme | X-ray diffraction | 2.9 | 139 | 2009-11-03 | |||
| 20 | 3G8T|1|S | glmS glucosamine-6-phosphate activated ribozyme, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-ray diffraction | 3 | 140 | 2009-11-03 | |||
| 21 | 3L3C|1|S | GLMS RIBOZYME, RNA (5'-R(*AP*(A2M)*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P | X-ray diffraction | 2.85 | 140 | 2009-12-29 | ||||
| 22 | 3G8S|1|P | GLMS RIBOZYME, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme | X-ray diffraction | 3.1 | 140 | 2009-11-03 | ||||
| 23 | 3G9C|1|R | GLMS RIBOZYME, RNA (5'-R(*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | synthetic construct | Crystal structure of the product Bacillus anthracis glmS ribozyme | X-ray diffraction | 2.9 | 140 | 2009-11-03 | |||
| 24 | 3G8S|1|S | GLMS RIBOZYME, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3') | Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme | X-ray diffraction | 3.1 | 140 | 2009-11-03 |
Release history
| Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 |
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| Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_08692.1 | NR_3.5_08692.2 | 3.0 | (24) 2NZ4|1|P, 2NZ4|1|Q, 2NZ4|1|R, 2NZ4|1|S, 3G8S|1|P, 3G8S|1|Q, 3G8S|1|R, 3G8S|1|S, 3G8T|1|P, 3G8T|1|Q, 3G8T|1|R, 3G8T|1|S, 3G96|1|P, 3G96|1|Q, 3G96|1|R, 3G96|1|S, 3G9C|1|P, 3G9C|1|Q, 3G9C|1|R, 3G9C|1|S, 3L3C|1|P, 3L3C|1|Q, 3L3C|1|R, 3L3C|1|S | (0) | (4) 3G95|1|P, 3G95|1|Q, 3G95|1|R, 3G95|1|S |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 3G8T|1|P | Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-RAY DIFFRACTION | 3 | 140 | |
| 2 | 3G8T|1|R | Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-RAY DIFFRACTION | 3 | 140 | |
| 3 | 3G8S|1|P | Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme | X-RAY DIFFRACTION | 3.1 | 140 | |
| 4 | 3G8S|1|S | Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme | X-RAY DIFFRACTION | 3.1 | 140 | |
| 5 | 3L3C|1|P | Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P | X-RAY DIFFRACTION | 2.85 | 140 | |
| 6 | 2NZ4|1|P | Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-RAY DIFFRACTION | 2.5 | 140 | |
| 7 | 3L3C|1|S | Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P | X-RAY DIFFRACTION | 2.85 | 140 | |
| 8 | 2NZ4|1|S | Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-RAY DIFFRACTION | 2.5 | 140 | |
| 9 | 3G96|1|P | Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P | X-RAY DIFFRACTION | 3.01 | 140 | |
| 10 | 3G96|1|S | Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P | X-RAY DIFFRACTION | 3.01 | 140 | |
| 11 | 3G8S|1|R | Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme | X-RAY DIFFRACTION | 3.1 | 140 | |
| 12 | 3L3C|1|Q | Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P | X-RAY DIFFRACTION | 2.85 | 140 | |
| 13 | 2NZ4|1|R | Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-RAY DIFFRACTION | 2.5 | 140 | |
| 14 | 2NZ4|1|Q | Structural investigation of the GlmS ribozyme bound to its catalytic cofactor | X-RAY DIFFRACTION | 2.5 | 140 | |
| 15 | 3G96|1|Q | Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P | X-RAY DIFFRACTION | 3.01 | 140 | |
| 16 | 3G96|1|R | Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P | X-RAY DIFFRACTION | 3.01 | 140 | |
| 17 | 3G9C|1|Q | Crystal structure of the product Bacillus anthracis glmS ribozyme | X-RAY DIFFRACTION | 2.9 | 140 | |
| 18 | 3G9C|1|R | Crystal structure of the product Bacillus anthracis glmS ribozyme | X-RAY DIFFRACTION | 2.9 | 140 | |
| 19 | 3G8S|1|Q | Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme | X-RAY DIFFRACTION | 3.1 | 140 | |
| 20 | 3L3C|1|R | Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P | X-RAY DIFFRACTION | 2.85 | 140 | |
| 21 | 3G9C|1|P | Crystal structure of the product Bacillus anthracis glmS ribozyme | X-RAY DIFFRACTION | 2.9 | 139 | |
| 22 | 3G9C|1|S | Crystal structure of the product Bacillus anthracis glmS ribozyme | X-RAY DIFFRACTION | 2.9 | 139 | |
| 23 | 3G8T|1|Q | Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-RAY DIFFRACTION | 3 | 140 | |
| 24 | 3G8T|1|S | Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P | X-RAY DIFFRACTION | 3 | 140 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: