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Equivalence class NR_3.5_93855.12 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17QI4|1|AA (rep)Small subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome at 2.2 A resolutionElectron microscopy2.212022-07-13
27P2E|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycinElectron microscopy2.42022-07-27
36ZM6|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAElectron microscopy2.592021-01-13
47PNX|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation aElectron microscopy2.762022-06-15
58CSS|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State D)Electron microscopy2.362022-12-14
66ZM5|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideElectron microscopy2.892021-01-13
76VMI|1|AASmall subunit ribosomal RNA12s rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)Electron microscopy2.962020-08-05
87PO3|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome small subunitElectron microscopy2.922022-06-15
97PO1|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Initiation complex of human mitochondrial ribosome small subunit with IF3Electron microscopy2.922022-06-15
107PO0|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3Electron microscopy2.92022-06-15
116VLZ|1|AASmall subunit ribosomal RNA12s rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)Electron microscopy2.972020-08-05
126RW4|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3Electron microscopy2.972020-06-03
138CSR|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State C)Electron microscopy2.542022-12-14
147PO2|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNAElectron microscopy3.092022-06-15
157PNY|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation bElectron microscopy3.062022-06-15
167PNZ|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation cElectron microscopy3.092022-06-15
176RW5|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3Electron microscopy3.142020-06-03
188CST|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State E)Electron microscopy2.852022-12-14
198CSQ|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State B)Electron microscopy2.542022-12-14
208CSU|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State C*)Electron microscopy3.032022-12-14
217L08|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.Electron microscopy3.492021-05-12
228CSP|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State A)Electron microscopy2.662022-12-14
236ZSC|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with E-site tRNAElectron microscopy3.52020-09-16
243J9M|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome (class 1)Electron microscopy3.52015-04-15

Release history

Release3.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.282
Date2022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_93855.12NR_3.5_93855.113.261(18) 6ZM6|1|AA, 7PNY|1|A, 3J9M|1|AA, 7PO3|1|A, 6ZM5|1|AA, 7PNX|1|A, 7PO2|1|A, 6VMI|1|AA, 7P2E|1|A, 7PO1|1|A, 6VLZ|1|AA, 7L08|1|AA, 7PO0|1|A, 6RW5|1|A, 6ZSC|1|AA, 7PNZ|1|A, 6RW4|1|A, 7QI4|1|AA(6) 8CSP|1|A, 8CSR|1|A, 8CST|1|A, 8CSU|1|A, 8CSQ|1|A, 8CSS|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_93855.12NR_3.5_93855.133.283(24) 6ZM6|1|AA, 8CST|1|A, 6ZM5|1|AA, 8CSS|1|A, 6VMI|1|AA, 8CSR|1|A, 6VLZ|1|AA, 8CSQ|1|A, 6RW5|1|A, 8CSP|1|A, 6RW4|1|A, 7QI4|1|AA, 3J9M|1|AA, 7PO3|1|A, 7PO2|1|A, 7PO1|1|A, 7PO0|1|A, 7PNZ|1|A, 7PNY|1|A, 7PNX|1|A, 7P2E|1|A, 7L08|1|AA, 6ZSC|1|AA, 8CSU|1|A(0) (1) 7QI6|1|AA

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17PNY|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation bELECTRON MICROSCOPY3.06946
26VLZ|1|AAStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.97944
36VMI|1|AAStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.96944
47L08|1|AACryo-EM structure of the human 55S mitoribosome-RRFmt complex.ELECTRON MICROSCOPY3.49944
53J9M|1|AAStructure of the human mitochondrial ribosome (class 1)ELECTRON MICROSCOPY3.5923
66ZSC|1|AAHuman mitochondrial ribosome in complex with E-site tRNAELECTRON MICROSCOPY3.5927
77QI4|1|AAHuman mitochondrial ribosome at 2.2 A resolutionELECTRON MICROSCOPY2.21949
86ZM6|1|AAHuman mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.59954
96ZM5|1|AAHuman mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.89954
107PO2|1|AInitiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNAELECTRON MICROSCOPY3.09950
117PO3|1|AHuman mitochondrial ribosome small subunitELECTRON MICROSCOPY2.92950
127PO1|1|AInitiation complex of human mitochondrial ribosome small subunit with IF3ELECTRON MICROSCOPY2.92950
136RW5|1|AStructure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3ELECTRON MICROSCOPY3.14950
146RW4|1|AStructure of human mitochondrial 28S ribosome in complex with mitochondrial IF3ELECTRON MICROSCOPY2.97950
157P2E|1|AHuman mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycinELECTRON MICROSCOPY2.4959
167PNZ|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation cELECTRON MICROSCOPY3.09946
177PO0|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3ELECTRON MICROSCOPY2.9946
187PNX|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation aELECTRON MICROSCOPY2.76946
198CST|1|AHuman mitochondrial small subunit assembly intermediate (State E)ELECTRON MICROSCOPY2.85886
208CSS|1|AHuman mitochondrial small subunit assembly intermediate (State D)ELECTRON MICROSCOPY2.36844
218CSR|1|AHuman mitochondrial small subunit assembly intermediate (State C)ELECTRON MICROSCOPY2.54853
228CSU|1|AHuman mitochondrial small subunit assembly intermediate (State C*)ELECTRON MICROSCOPY3.03881
238CSQ|1|AHuman mitochondrial small subunit assembly intermediate (State B)ELECTRON MICROSCOPY2.54802
248CSP|1|AHuman mitochondrial small subunit assembly intermediate (State A)ELECTRON MICROSCOPY2.66737
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