#IFECompound(s)RNA source organismTitleMethodResolutionDate
13ULD|1|B (rep)RNA (5'-R(*UP*CP*GP*AP*CP*A)-3')High resolution structure of DNA/RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.62012-11-14
22G8K|1|B5'-R(*UP*CP*GP*AP*CP*A)-3'B. halodurans RNase H catalytic domain D192N mutant in complex with Ca2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.652006-04-25
32R7Y|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')Selenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132NX-RAY DIFFRACTION1.82008-05-06
45USE|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')synthetic construct5-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.732017-03-08
52G8F|1|B5'-R(*UP*CP*GP*AP*CP*A)-3'B. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.652006-04-25
65USA|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')synthetic construct5-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.82017-03-08
72G8U|1|B5'-R(*UP*CP*GP*AP*CP*A)-3'B. halodurans RNase H catalytic domain D132N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION2.72006-04-25
85W7N|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')synthetic construct2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.82017-06-28
95W7O|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')synthetic construct2-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.752017-06-28
102G8I|1|B5'-R(*UP*CP*GP*AP*CP*A)-3'B. halodurans RNase H catalytic domain D192N mutant in complex with Mn2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.652006-04-25
115USG|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')synthetic construct5-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.72017-03-08
125US2|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')synthetic construct2-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.92017-03-08
132G8H|1|B5'-R(*UP*CP*GP*AP*CP*A)-3'B. halodurans RNase H catalytic domain D192N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.852006-04-25
143TWH|1|BRNA (5'-R(*UP*CP*GP*AP*CP*A)-3')Selenium Derivatized RNA/DNA Hybrid in complex with RNase H Catalytic Domain D132N MutantX-RAY DIFFRACTION1.792012-10-03
152G8V|1|B5'-R(P*UP*CP*GP*AP*CP*A)-3'B. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (reaction product)X-RAY DIFFRACTION1.852006-04-25
162G8W|1|B5'-R(P*UP*CP*GP*AP*CP*A)-3'B. halodurans RNase H catalytic domain E188A mutant in complex with Ca2+ and RNA/DNA hybridX-RAY DIFFRACTION2.052006-04-25

Release history

Release2.1352.1362.1372.1382.1392.140
Date2017-07-042017-07-102017-07-152017-07-262017-07-312017-08-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_09880.3NR_4.0_09880.22.135(14) 2R7Y|1|B, 2G8W|1|B, 2G8V|1|B, 2G8U|1|B, 2G8K|1|B, 2G8I|1|B, 2G8H|1|B, 2G8F|1|B, 5USG|1|B, 5USE|1|B, 5USA|1|B, 5US2|1|B, 3ULD|1|B, 3TWH|1|B(2) 5W7N|1|B, 5W7O|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_09880.3NR_4.0_09880.42.141(16) 2R7Y|1|B, 2G8W|1|B, 2G8V|1|B, 2G8U|1|B, 2G8K|1|B, 2G8I|1|B, 2G8H|1|B, 2G8F|1|B, 5W7O|1|B, 5W7N|1|B, 5USG|1|B, 5USE|1|B, 5USA|1|B, 5US2|1|B, 3ULD|1|B, 3TWH|1|B(0) (1) 5WJR|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12G8W|1|BB. halodurans RNase H catalytic domain E188A mutant in complex with Ca2+ and RNA/DNA hybridX-RAY DIFFRACTION2.056
23ULD|1|BHigh resolution structure of DNA/RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.66
35USA|1|B5-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.86
45W7O|1|B2-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.756
55USE|1|B5-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.736
65USG|1|B5-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.76
72G8K|1|BB. halodurans RNase H catalytic domain D192N mutant in complex with Ca2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.656
82G8F|1|BB. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.656
92G8I|1|BB. halodurans RNase H catalytic domain D192N mutant in complex with Mn2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.656
102G8H|1|BB. halodurans RNase H catalytic domain D192N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.856
115W7N|1|B2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.86
122G8U|1|BB. halodurans RNase H catalytic domain D132N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION2.76
132G8V|1|BB. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (reaction product)X-RAY DIFFRACTION1.856
143TWH|1|BSelenium Derivatized RNA/DNA Hybrid in complex with RNase H Catalytic Domain D132N MutantX-RAY DIFFRACTION1.796
152R7Y|1|BSelenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132NX-RAY DIFFRACTION1.86
165US2|1|B2-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.96