#PDBTitleRNA source organismCompoundsMethodResolutionDate
13ULD|1|B (rep)High resolution structure of DNA/RNA hybrid in complex with RNase H catalytic domain D132N mutantRibonuclease H, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*AP*TP*GP*TP*CP*(PGN))-3')X-RAY DIFFRACTION1.62012-11-14
22G8K|1|BB. halodurans RNase H catalytic domain D192N mutant in complex with Ca2+ and RNA/DNA hybrid (non-P nick at the active site)Ribonuclease H, 5'-R(*UP*CP*GP*AP*CP*A)-3', 5'-D(*AP*TP*GP*TP*CP*G)-3'X-RAY DIFFRACTION1.652006-04-25
32R7Y|1|BSelenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132NRibonuclease H, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*DAP*DTP*(SDG)P*DTP*DCP*(SDG))-3')X-RAY DIFFRACTION1.82008-05-06
45USE|1|B5-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantsynthetic constructRibonuclease H, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*AP*TP*GP*(T5S)P*CP*G)-3')X-RAY DIFFRACTION1.732017-03-08
52G8F|1|BB. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)Ribonuclease H, 5'-R(*UP*CP*GP*AP*CP*A)-3', 5'-D(*AP*TP*GP*TP*CP*G)-3'X-RAY DIFFRACTION1.652006-04-25
65USA|1|B5-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantsynthetic constructRibonuclease H, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*AP*(T5S)P*GP*TP*CP*G)-3')X-RAY DIFFRACTION1.82017-03-08
72G8U|1|BB. halodurans RNase H catalytic domain D132N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)Ribonuclease H, 5'-R(*UP*CP*GP*AP*CP*A)-3', 5'-D(*AP*TP*GP*TP*CP*G)-3'X-RAY DIFFRACTION2.72006-04-25
85W7N|1|B2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantsynthetic constructRibonuclease H, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*AP*(US3)P*GP*(US3)P*CP*G)-3')X-RAY DIFFRACTION1.82017-06-28
95W7O|1|B2-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantsynthetic constructRibonuclease H, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*AP*TP*GP*(US3)P*CP*G)-3')X-RAY DIFFRACTION1.752017-06-28
102G8I|1|BB. halodurans RNase H catalytic domain D192N mutant in complex with Mn2+ and RNA/DNA hybrid (non-P nick at the active site)Ribonuclease H, 5'-R(*UP*CP*GP*AP*CP*A)-3', 5'-D(*AP*TP*GP*TP*CP*G)-3'X-RAY DIFFRACTION1.652006-04-25
115USG|1|B5-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantsynthetic constructRibonuclease H, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*AP*(T5S)P*GP*(T5S)P*CP*G)-3')X-RAY DIFFRACTION1.72017-03-08
125US2|1|B2-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantsynthetic constructRibonuclease H, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*AP*(US3)P*GP*TP*CP*G)-3')X-RAY DIFFRACTION1.92017-03-08
135WJR|1|B2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantsynthetic constructRibonuclease H, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*AP*TP*GP*TP*CP*G)-3')X-RAY DIFFRACTION1.72017-08-09
142G8H|1|BB. halodurans RNase H catalytic domain D192N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)Ribonuclease H, 5'-R(*UP*CP*GP*AP*CP*A)-3', 5'-D(*AP*TP*GP*TP*CP*G)-3'X-RAY DIFFRACTION1.852006-04-25
153TWH|1|BSelenium Derivatized RNA/DNA Hybrid in complex with RNase H Catalytic Domain D132N MutantRibonuclease H, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*AP*TP*(SDG)P*TP*CP*(SDG))-3')X-RAY DIFFRACTION1.792012-10-03
162G8V|1|BB. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (reaction product)Ribonuclease H, 5'-R(P*UP*CP*GP*AP*CP*A)-3', 5'-D(*AP*TP*GP*TP*CP*G)-3'X-RAY DIFFRACTION1.852006-04-25
172G8W|1|BB. halodurans RNase H catalytic domain E188A mutant in complex with Ca2+ and RNA/DNA hybridRibonuclease H, 5'-R(P*UP*CP*GP*AP*CP*A)-3', 5'-D(*AP*TP*GP*TP*CP*G)-3'X-RAY DIFFRACTION2.052006-04-25

Release history

Release2.1412.1422.1432.1442.1452.146
Date2017-08-122017-08-192017-08-262017-09-032017-09-092017-09-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_09880.4NR_4.0_09880.32.141(16) 3TWH|1|B, 2R7Y|1|B, 2G8W|1|B, 2G8V|1|B, 2G8U|1|B, 2G8K|1|B, 2G8I|1|B, 2G8H|1|B, 2G8F|1|B, 5W7O|1|B, 5W7N|1|B, 5USG|1|B, 5USE|1|B, 5USA|1|B, 5US2|1|B, 3ULD|1|B(1) 5WJR|1|B(0)

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12G8W|1|BB. halodurans RNase H catalytic domain E188A mutant in complex with Ca2+ and RNA/DNA hybridX-RAY DIFFRACTION2.056
22G8U|1|BB. halodurans RNase H catalytic domain D132N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION2.76
35W7N|1|B2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.86
45W7O|1|B2-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.756
55USE|1|B5-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.736
65USG|1|B5-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.76
75WJR|1|B2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.76
82G8H|1|BB. halodurans RNase H catalytic domain D192N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.856
92G8I|1|BB. halodurans RNase H catalytic domain D192N mutant in complex with Mn2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.656
102G8F|1|BB. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.656
112G8K|1|BB. halodurans RNase H catalytic domain D192N mutant in complex with Ca2+ and RNA/DNA hybrid (non-P nick at the active site)X-RAY DIFFRACTION1.656
125USA|1|B5-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.86
133ULD|1|BHigh resolution structure of DNA/RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.66
142R7Y|1|BSelenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132NX-RAY DIFFRACTION1.86
153TWH|1|BSelenium Derivatized RNA/DNA Hybrid in complex with RNase H Catalytic Domain D132N MutantX-RAY DIFFRACTION1.796
165US2|1|B2-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutantX-RAY DIFFRACTION1.96
172G8V|1|BB. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (reaction product)X-RAY DIFFRACTION1.856